YRC Public Data Repository - Protein Structure Prediction

Protein:	HOKE_ECOLI
Organism:	Escherichia coli
Length:	50 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HOKE_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|195936128 - gi\|195936128\|ref\|ZP_03081510.1\| hypothetical protein EscherichcoliO157_06636 [Escherichia coli O157:... gi\|209777642, gi... - pir\|\|G85556 hypothetical protein Z0721 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|15800295, gi\|... - gi\|15800295\|ref\|NP_286307.1\| hypothetical protein Z0721 [Escherichia coli O157:H7 EDL933], gi\|125134... gi\|254591147, gi... - gi\|254791747\|ref\|YP_003076584.1\| hypothetical protein ECSP_0634 [Escherichia coli O157:H7 str. TW143...	96.0	[0..1]	[50..49]
gi\|124499967, gi... - gi\|124529367\|ref\|ZP_01700401.1\| Hok/gef cell toxic protein [Escherichia coli B], gi\|124499967\|gb\|EAY... gi\|157065754, gi... - gi\|157160074\|ref\|YP_001457392.1\| Hok/Gef family protein [Escherichia coli HS], gi\|157065754\|gb\|ABV05... gi\|4062210 - dbj\|BAA35222.1\| Hypothetical 6.0 kd protein in cspA-glyS intergenic region. [Escherichia coli K12] gi\|1778497 - gi\|1778497\|gb\|AAB40780.1\| hypothetical protein [Escherichia coli]	87.0	[0..1]	[50..34]
gi\|30040283, gi\|... - gi\|30062039\|ref\|NP_836210.1\| hypothetical protein S0500 [Shigella flexneri 2a str. 2457T], gi\|300402...	85.0	[0..1]	[50..34]
gi\|110640812, gi... - gi\|110640812\|ref\|YP_668540.1\| hypothetical protein ECP_0613 [Escherichia coli 536], gi\|110342404\|gb\|... gi\|218431012, gi... - gi\|218703915\|ref\|YP_002411434.1\| toxic polypeptide, small [Escherichia coli UMN026], gi\|218431012\|em...	84.0	[0..1]	[50..13]
gi\|15829874, gi\|... - gi\|15829874\|ref\|NP_308647.1\| hypothetical protein ECs0620 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|25389862 - pir\|\|D90706 hypothetical protein ECs0620 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|217320711, gi... - gi\|217324490\|ref\|ZP_03440574.1\| Hok/Gef family protein [Escherichia coli O157:H7 str. TW14588], gi\|2... HOKF_ECO57 - Putative protein HokF OS=Escherichia coli O157:H7 GN=hokF PE=3 SV=3	79.0	[0..1]	[50..1]
HOKE_ECO57 - Protein HokE OS=Escherichia coli O157:H7 GN=hokE PE=3 SV=2 HOKE_SHIFL - Protein HokE OS=Shigella flexneri GN=hokE PE=3 SV=2 gi\|168779067, gi... - gi\|189003130\|gb\|EDU72116.1\| Hok/Gef family protein [Escherichia coli O157:H7 str. EC4076], gi\|168779... gi\|75189621 - gi\|75189621\|ref\|ZP_00702888.1\| hypothetical protein EcolE_01002908 [Escherichia coli E24377A] gi\|75177516 - gi\|75177516\|ref\|ZP_00697597.1\| hypothetical protein SboyB_01002474 [Shigella boydii BS512] gi\|190907435, gi... - gi\|75240739\|ref\|ZP_00724646.1\| hypothetical protein EcolF_01002248 [Escherichia coli F11], gi\|191172... gi\|193069056, gi... - gi\|75236564\|ref\|ZP_00720652.1\| hypothetical protein EcolE1_01002072 [Escherichia coli E110019], gi\|1... gi\|75227366, gi\|... - gi\|75227366\|ref\|ZP_00714144.1\| hypothetical protein EcolB7_01004194 [Escherichia coli B7A], gi\|19116... gi\|75210789, gi\|... - gi\|75210789\|ref\|ZP_00710921.1\| hypothetical protein EcolB_01002100 [Escherichia coli B171], gi\|19442... gi\|208737060, gi... - gi\|208822867\|ref\|ZP_03263185.1\| Hok/Gef family protein [Escherichia coli O157:H7 str. EC4042], gi\|20... gi\|209395884, gi... - gi\|209395884\|ref\|YP_002269214.1\| Hok/Gef family protein [Escherichia coli O157:H7 str. EC4115], gi\|2... gi\|208728643, gi... - gi\|208808842\|ref\|ZP_03251179.1\| Hok/Gef family protein [Escherichia coli O157:H7 str. EC4206], gi\|20... gi\|193063404, gi... - gi\|75258681\|ref\|ZP_00730088.1\| hypothetical protein EcolE2_01001627 [Escherichia coli E22], gi\|19306... gi\|208816332, gi... - gi\|208816332\|ref\|ZP_03257511.1\| Hok/Gef family protein [Escherichia coli O157:H7 str. EC4045], gi\|20... gi\|218688408, gi... - gi\|218688408\|ref\|YP_002396620.1\| toxic polypeptide, small [Escherichia coli ED1a], gi\|218425972\|emb\|... gi\|218431013, gi... - gi\|218703916\|ref\|YP_002411435.1\| toxic polypeptide, small [Escherichia coli UMN026], gi\|218431013\|em... gi\|217325952, gi... - gi\|217325952\|ref\|ZP_03442036.1\| Hok/Gef family protein [Escherichia coli O157:H7 str. TW14588], gi\|2... gi\|218557522, gi... - gi\|218557522\|ref\|YP_002390435.1\| toxic polypeptide, small [Escherichia coli S88], gi\|218364291\|emb\|C... gi\|187775985, gi... - gi\|187775985\|ref\|ZP_02799646.2\| Hok/Gef family protein [Escherichia coli O157:H7 str. EC4196], gi\|18... gi\|188024618, gi... - gi\|188024618\|ref\|ZP_02772774.2\| Hok/Gef family protein [Escherichia coli O157:H7 str. EC4113], gi\|18... gi\|189373775, gi... - gi\|189373775\|gb\|EDU92191.1\| Hok/Gef family protein [Escherichia coli O157:H7 str. EC869], gi\|1687864... gi\|170683298, gi... - gi\|170683298\|ref\|YP_001742698.1\| Hok/Gef family protein [Escherichia coli SMS-3-5], gi\|170521016\|gb\|... gi\|189369188, gi... - gi\|189403825\|ref\|ZP_02785281.2\| Hok/Gef family protein [Escherichia coli O157:H7 str. EC4501], gi\|18... gi\|189405621, gi... - gi\|189405621\|ref\|ZP_02823144.2\| Hok/Gef family protein [Escherichia coli O157:H7 str. EC508], gi\|189... gi\|189358014, gi... - gi\|189402025\|ref\|ZP_02779684.2\| Hok/Gef family protein [Escherichia coli O157:H7 str. EC4401], gi\|18... gi\|189360890, gi... - gi\|189403401\|ref\|ZP_02795187.2\| Hok/Gef family protein [Escherichia coli O157:H7 str. EC4486], gi\|18... gi\|226898658, gi... - gi\|237707448\|ref\|ZP_04537929.1\| hok/Gef family protein [Escherichia sp. 3_2_53FAA], gi\|226898658\|gb\|... gi\|227884439, gi... - gi\|227884439\|ref\|ZP_04002244.1\| Hok/Gef family protein [Escherichia coli 83972], gi\|227838525\|gb\|EEJ... gi\|254591148, gi... - gi\|254791748\|ref\|YP_003076585.1\| toxic polypeptide, small [Escherichia coli O157:H7 str. TW14359], g...	76.0	[0..1]	[50..1]
gi\|218359891, gi... - gi\|218553123\|ref\|YP_002386036.1\| toxic polypeptide, small [Escherichia coli IAI1], gi\|218359891\|emb\|... gi\|218694022, gi... - gi\|218694022\|ref\|YP_002401689.1\| toxic polypeptide, small [Escherichia coli 55989], gi\|218350754\|emb... gi\|193063335, gi... - gi\|75258682\|ref\|ZP_00730089.1\| hypothetical protein EcolE2_01001628 [Escherichia coli E22], gi\|19306... gi\|193069062, gi... - gi\|75236563\|ref\|ZP_00720651.1\| hypothetical protein EcolE1_01002071 [Escherichia coli E110019], gi\|1... gi\|190900638, gi... - gi\|75227367\|ref\|ZP_00714145.1\| hypothetical protein EcolB7_01004195 [Escherichia coli B7A], gi\|19116... gi\|194427968, gi... - gi\|75210791\|ref\|ZP_00710923.1\| hypothetical protein EcolB_01002102 [Escherichia coli B171], gi\|19442...	76.0	[0..1]	[50..1]

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Predicted Domain #1

Region A:
Residues: [1-50]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTKYALAAV IVLCLTVLGF TLLVGDSLCE FTVKERNIEF KAVLAYEPKK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits