YRC Public Data Repository - Protein Structure Prediction

Protein:	HOKD_ECOLI
Organism:	Escherichia coli
Length:	51 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HOKD_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|75510952, gi\|... - gi\|75510952\|ref\|ZP_00733717.1\| hypothetical protein Ecol5_01004671 [Escherichia coli 53638], gi\|7551...	77.0	[0..1]	[51..20]
gi\|195936128 - gi\|195936128\|ref\|ZP_03081510.1\| hypothetical protein EscherichcoliO157_06636 [Escherichia coli O157:... gi\|209777642, gi... - pir\|\|G85556 hypothetical protein Z0721 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|15800295, gi\|... - gi\|15800295\|ref\|NP_286307.1\| hypothetical protein Z0721 [Escherichia coli O157:H7 EDL933], gi\|125134... gi\|254591147, gi... - gi\|254791747\|ref\|YP_003076584.1\| hypothetical protein ECSP_0634 [Escherichia coli O157:H7 str. TW143...	77.0	[0..2]	[51..49]
gi\|75259327 - gi\|75259327\|ref\|ZP_00730646.1\| hypothetical protein EcolE2_01000756 [Escherichia coli E22]	76.0	[0..1]	[51..20]
gi\|25301432 - pir\|\|B90973 prophage maintenance protein [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|75215059 - gi\|75215059\|ref\|ZP_00713516.1\| hypothetical protein EcolE1_01004303 [Escherichia coli E110019] gi\|13362222, gi\|... - gi\|15832008\|ref\|NP_310781.1\| prophage maintenance protein [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|13362222, gi\|... - gi\|15832008\|ref\|NP_310781.1\| prophage maintenance protein [Escherichia coli O157:H7], gi\|13362222\|db... gi\|195939786 - gi\|195939786\|ref\|ZP_03085168.1\| prophage maintenance protein [Escherichia coli O157:H7 str. EC4024]	75.0	[0..1]	[51..20]
gi\|91072073, gi\|... - gi\|91210499\|ref\|YP_540485.1\| putative cell killing protein encoded within cryptic prophage CP-933M [... gi\|226899997, gi... - gi\|237705240\|ref\|ZP_04535721.1\| prophage maintenance protein [Escherichia sp. 3_2_53FAA], gi\|2268999...	75.0	[0..1]	[51..20]
gi\|75235179 - gi\|75235179\|ref\|ZP_00719421.1\| hypothetical protein EcolE1_01003041 [Escherichia coli E110019]	74.0	[0..1]	[51..20]

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Predicted Domain #1

Region A:
Residues: [1-51]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQQKAMLIA LIVICLTVIV TALVTRKDLC EVRIRTGQTE VAVFTAYEPE E

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits