YRC Public Data Repository - Protein Structure Prediction

Protein:	HOKB_ECOLI
Organism:	Escherichia coli
Length:	49 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HOKB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|25499538 - pir\|\|F86030 probable membrane permeability altering protein Z4982 [imported] - Escherichia coli (str... gi\|12518292, gi\|... - gi\|15804103\|ref\|NP_290142.1\| small toxic polypeptide [Escherichia coli O157:H7 EDL933], gi\|12518292\|... gi\|195935088 - gi\|195935088\|ref\|ZP_03080470.1\| small toxic polypeptide [Escherichia coli O157:H7 str. EC4024]	73.0	[0..1]	[46..21]
gi\|9507608, gi\|5... - gi\|9507608\|ref\|NP_052939.1\| small toxic polypeptide [Plasmid R100], gi\|5103207\|dbj\|BAA78843.1\| post-... gi\|58383263, gi\|... - gi\|58383263\|ref\|YP_194833.1\| small toxic polypeptide [Salmonella typhimurium], gi\|37962742\|gb\|AAR056... gi\|170522121, gi... - gi\|170650845\|ref\|YP_001739938.1\| stable plasmid inheritance protein Hok [Escherichia coli SMS-3-5], ... HOK_ECOLX - Protein hok OS=Escherichia coli GN=hok PE=3 SV=1 gi\|37962742\|gb\|A... - post-segregation killing protein [Salmonella typhimurium], post-segregation killing protein [Salmone... gi\|118197020 - gi\|118197020\|emb\|CAL69696.1\| killer protein [Escherichia coli]	72.0	[0..1]	[48..3]
gi\|38259540, gi\|... - gi\|38348063\|ref\|NP_941312.1\| small toxic polypeptide [Serratia marcescens], gi\|38259540\|emb\|CAE51768... gi\|226426016, gi... - gi\|226810103\|ref\|YP_002791798.1\| hypothetical protein pEC-IMPQ_230 [Enterobacter cloacae], gi\|226807...	70.0	[0..1]	[48..3]
gi\|10957290, gi\|... - gi\|7800343\|gb\|AAF69939.1\|AF250878_100 plasmid maintenance protein [Salmonella typhi], gi\|10957290\|re... gi\|7800343\|gb\|AA... - plasmid maintenance protein [Salmonella typhi], plasmid maintenance protein [Salmonella typhi]	70.0	[0..1]	[48..22]
gi\|254667512, gi... - gi\|254667512\|ref\|YP_003082198.1\| small toxic polypeptide [Escherichia coli O157:H7 str. TW14359], gi... gi\|91075794, gi\|... - gi\|91206343\|ref\|YP_538697.1\| stable plasmid inheritance protein [Escherichia coli UTI89], gi\|9107579... gi\|3337051, gi\|1... - gi\|3337051\|dbj\|BAA31810.1\| Stable plasmid inheritance protein (F leading maintenance protein) [Esche... gi\|75994536 - gi\|75994536\|ref\|YP_325650.1\| small toxic polypeptide [Escherichia coli O157:H7 EDL933] gi\|8918889, gi\|9... - gi\|9507779\|ref\|NP_061445.1\| small toxic polypeptide [Plasmid F], gi\|8918889\|dbj\|BAA97936.1\| flmA [Pl... FLMA_ECOLI - Stable plasmid inheritance protein (F leading maintenance protein) - Escherichia coli FLMA_ECO57 - Stable plasmid inheritance protein OS=Escherichia coli O157:H7 GN=flmA PE=3 SV=1 FLMA_ECOLI, sp\|P... - Stable plasmid inheritance protein OS=Escherichia coli (strain K12) GN=flmA PE=3 SV=1, Stable plasmi... gi\|208811338, gi... - gi\|208811338\|ref\|ZP_03253098.1\| stable plasmid inheritance protein Hok [Escherichia coli O157:H7 str... gi\|208823393, gi... - gi\|208823393\|ref\|ZP_03263710.1\| stable plasmid inheritance protein Hok [Escherichia coli O157:H7 str... gi\|209395606, gi... - gi\|209395606\|ref\|YP_002268451.1\| stable plasmid inheritance protein Hok [Escherichia coli O157:H7 st... gi\|217317101, gi... - gi\|217329870\|ref\|ZP_03445945.1\| stable plasmid inheritance protein Hok [Escherichia coli O157:H7 str... gi\|187736776 - gi\|187736776\|ref\|YP_001816514.1\| small toxic polypeptide [Escherichia coli 1520] gi\|195939986 - gi\|195939986\|ref\|ZP_03085368.1\| small toxic polypeptide [Escherichia coli O157:H7 str. EC4024]	70.0	[0..1]	[48..3]
gi\|75510952, gi\|... - gi\|75510952\|ref\|ZP_00733717.1\| hypothetical protein Ecol5_01004671 [Escherichia coli 53638], gi\|7551...	70.0	[0..3]	[48..23]
gi\|160431875, gi... - gi\|160431875\|ref\|YP_001551989.1\| small toxic polypeptide [Salmonella enterica subsp. enterica serova... gi\|145849097 - gi\|145849097\|emb\|CAM91663.1\| putative stable plasmid inheritance protein [Salmonella enterica] gi\|16505979, gi\|... - gi\|18466663\|ref\|NP_569471.1\| small toxic polypeptide [Salmonella enterica subsp. enterica serovar Ty...	70.0	[0..1]	[48..3]
gi\|110345397, gi... - gi\|110643805\|ref\|YP_671535.1\| small toxic polypeptide [Escherichia coli 536], gi\|110345397\|gb\|ABG716... gi\|91213071, gi\|... - gi\|91213071\|ref\|YP_543057.1\| small toxic polypeptide [Escherichia coli UTI89], gi\|91074645\|gb\|ABE095... gi\|237703328, gi... - gi\|237703328\|ref\|ZP_04533809.1\| small toxic polypeptide [Escherichia sp. 3_2_53FAA], gi\|226902592\|gb...	70.0	[0..1]	[49..21]
gi\|187731329, gi... - gi\|187731329\|ref\|YP_001882250.1\| protein hokA [Shigella boydii CDC 3083-94], gi\|187428321\|gb\|ACD0759... gi\|81247333, gi\|... - gi\|82545922\|ref\|YP_409869.1\| small toxic polypeptide [Shigella boydii Sb227], gi\|81247333\|gb\|ABB6804...	69.0	[0..1]	[46..1]

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Predicted Domain #1

Region A:
Residues: [1-49]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHNPLVVCL LIICITILTF TLLTRQTLYE LRFRDGDKEV AALMACTSR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits