YRC Public Data Repository - Protein Structure Prediction

Protein:	HOKA_ECOLI
Organism:	Escherichia coli
Length:	50 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HOKA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|195936128 - gi\|195936128\|ref\|ZP_03081510.1\| hypothetical protein EscherichcoliO157_06636 [Escherichia coli O157:... gi\|209777642, gi... - pir\|\|G85556 hypothetical protein Z0721 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|15800295, gi\|... - gi\|15800295\|ref\|NP_286307.1\| hypothetical protein Z0721 [Escherichia coli O157:H7 EDL933], gi\|125134... gi\|254591147, gi... - gi\|254791747\|ref\|YP_003076584.1\| hypothetical protein ECSP_0634 [Escherichia coli O157:H7 str. TW143...	78.0	[0..1]	[50..49]
gi\|110345397, gi... - gi\|110643805\|ref\|YP_671535.1\| small toxic polypeptide [Escherichia coli 536], gi\|110345397\|gb\|ABG716... gi\|91213071, gi\|... - gi\|91213071\|ref\|YP_543057.1\| small toxic polypeptide [Escherichia coli UTI89], gi\|91074645\|gb\|ABE095... gi\|237703328, gi... - gi\|237703328\|ref\|ZP_04533809.1\| small toxic polypeptide [Escherichia sp. 3_2_53FAA], gi\|226902592\|gb...	75.0	[0..1]	[50..21]
gi\|9507608, gi\|5... - gi\|9507608\|ref\|NP_052939.1\| small toxic polypeptide [Plasmid R100], gi\|5103207\|dbj\|BAA78843.1\| post-... gi\|58383263, gi\|... - gi\|58383263\|ref\|YP_194833.1\| small toxic polypeptide [Salmonella typhimurium], gi\|37962742\|gb\|AAR056... gi\|170522121, gi... - gi\|170650845\|ref\|YP_001739938.1\| stable plasmid inheritance protein Hok [Escherichia coli SMS-3-5], ... HOK_ECOLX - Protein hok OS=Escherichia coli GN=hok PE=3 SV=1 gi\|37962742\|gb\|A... - post-segregation killing protein [Salmonella typhimurium], post-segregation killing protein [Salmone... gi\|118197020 - gi\|118197020\|emb\|CAL69696.1\| killer protein [Escherichia coli]	73.0	[0..1]	[50..3]
gi\|38259540, gi\|... - gi\|38348063\|ref\|NP_941312.1\| small toxic polypeptide [Serratia marcescens], gi\|38259540\|emb\|CAE51768... gi\|226426016, gi... - gi\|226810103\|ref\|YP_002791798.1\| hypothetical protein pEC-IMPQ_230 [Enterobacter cloacae], gi\|226807...	72.0	[0..1]	[50..3]
gi\|187731329, gi... - gi\|187731329\|ref\|YP_001882250.1\| protein hokA [Shigella boydii CDC 3083-94], gi\|187428321\|gb\|ACD0759... gi\|81247333, gi\|... - gi\|82545922\|ref\|YP_409869.1\| small toxic polypeptide [Shigella boydii Sb227], gi\|81247333\|gb\|ABB6804...	72.0	[0..1]	[50..1]
gi\|124499967, gi... - gi\|124529367\|ref\|ZP_01700401.1\| Hok/gef cell toxic protein [Escherichia coli B], gi\|124499967\|gb\|EAY... gi\|157065754, gi... - gi\|157160074\|ref\|YP_001457392.1\| Hok/Gef family protein [Escherichia coli HS], gi\|157065754\|gb\|ABV05... gi\|4062210 - dbj\|BAA35222.1\| Hypothetical 6.0 kd protein in cspA-glyS intergenic region. [Escherichia coli K12] gi\|1778497 - gi\|1778497\|gb\|AAB40780.1\| hypothetical protein [Escherichia coli]	72.0	[0..1]	[50..34]
gi\|82779379, gi\|... - gi\|82779379\|ref\|YP_405728.1\| small toxic polypeptide [Shigella dysenteriae Sd197], gi\|81243527\|gb\|AB...	72.0	[0..1]	[50..1]
gi\|30040283, gi\|... - gi\|30062039\|ref\|NP_836210.1\| hypothetical protein S0500 [Shigella flexneri 2a str. 2457T], gi\|300402...	72.0	[0..1]	[50..34]

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Predicted Domain #1

Region A:
Residues: [1-50]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQKYRLLSL IVICFTLLFF TWMIRDSLCE LHIKQESYEL AAFLACKLKE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits