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View Structure Prediction Details

Protein: pb-PA
Organism: Drosophila melanogaster
Length: 782 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pb-PA.

Description E-value Query
Range
Subject
Range
gi|109498320 - gi|109498320|ref|XP_001074557.1| PREDICTED: similar to dumpy CG33196-PB [Rattus norvegicus]
186.0 [0..2] [779..29]

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Predicted Domain #1
Region A:
Residues: [1-782]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQEVCSSLDT TSMGTQIKSE SPLNPLQVQT GQTSLPVGGC GGAGVVGGVG GVGVSVGQPG  60
   61 IGQQGVPPVP SVLMVNKMTP NCDKRSADTA YWMTASEGGF INSQPSMAEF LNHLSPESPK 120
  121 IGTPVGSGAI GGVGVNVNVN VGVGVGYPVG VVPQTPDGMD SVPEYPWMKE KKTSRKSSNN 180
  181 NNQGDNSITE FVPENGLPRR LRTAYTNTQL LELEKEFHFN KYLCRPRRIE IAASLDLTER 240
  241 QVKVWFQNRR MKHKRQTLSK TDDEDNKDSL KGDDDQSDSN SNSKKSCQGC ELPSDDIPDS 300
  301 TSNSRGHNNN TPSATNNNPS AGNLTPNSSL ETGISSNLMG STTVSASNVI SADSSVASSV 360
  361 SLDEDIEESS PIKVKKKDDG QVIKKEAVST SSKASPFGYE NSTPSLVSFR RDSDASAVGN 420
  421 APTSKAVGKK RFQSAANAIA TPTPLSDSNS GNGSGGGPAG GYFPGYYPSP KQQQQVQQQQ 480
  481 LHPQQQQLPQ QQPQDYYGKY DIEFAASPHH NPHNKQQALH GEYLSPKPSS ANFHQNSQQQ 540
  541 QQNDHFYYNY NDTNGTPYLN HQQQHHHHAQ HHQQQQHHQN HVADFEGPVN GPSNFNNGAY 600
  601 YDNMSFQQQA QAHQHQTVVF QQQQPHQPAA INHQHMHHLG NGETYSALGL QMENCEGYNN 660
  661 FGAAGTGGGY YEAGQQPPIP ATHGHGHHPH HVQVPAQAHA PIHAHHNSAA IPGGVGVGPP 720
  721 PSHIHGFAIN GGPAVQGQAF GNNGSTAAGT AAISGLENSN SSDFNFLSNL ANDFAPEYYQ 780
  781 LS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.39794
Match: 1y0fA
Description: No description for 1y0fA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle