YRC Public Data Repository - Protein Structure Prediction

Protein:	HHA_ECOLI
Organism:	Escherichia coli
Length:	72 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HHA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|47154986 - gi\|47154986\|emb\|CAE85185.1\| hypothetical protein [Escherichia coli] gi\|190907823, gi... - gi\|191171788\|ref\|ZP_03033334.1\| haemolysin expression modulating protein [Escherichia coli F11], gi\|... gi\|110344744, gi... - gi\|110643152\|ref\|YP_670882.1\| putative hemolysin expression modulating protein [Escherichia coli 536...	127.0	[0..7]	[71..63]
gi\|1773143 - gi\|1773143\|gb\|AAB40215.1\| Hha protein [Escherichia coli]	124.0	[0..1]	[72..68]
gi\|117622719, gi... - gi\|117622719\|ref\|YP_851632.1\| Hha protein [Escherichia coli APEC O1], gi\|115511843\|gb\|ABI99917.1\| Hh...	124.0	[0..1]	[72..68]
gi\|75241217 - gi\|75241217\|ref\|ZP_00725079.1\| hypothetical protein EcolF_01001780 [Escherichia coli F11]	117.0	[0..7]	[71..5]
gi\|26246473, gi\|... - gi\|26246473\|ref\|NP_752512.1\| hemolysin expression-modulating protein [Escherichia coli CFT073], gi\|2... gi\|91209533, gi\|... - gi\|91209533\|ref\|YP_539519.1\| hemolysin expression-modulating protein [Escherichia coli UTI89], gi\|91... gi\|24050637, gi\|... - ref\|NP_706353.1\| hha protein [Shigella flexneri 2a str. 301], gb\|AAN42060.1\| hha protein [Shigella ... gi\|170021152, gi... - gi\|170021152\|ref\|YP_001726106.1\| hemolysin expression-modulating protein [Escherichia coli ATCC 8739...	117.0	[0..1]	[72..5]
gi\|213612548 - gi\|213612548\|ref\|ZP_03370374.1\| Hha protein [Salmonella enterica subsp. enterica serovar Typhi str. ... gi\|213579729 - gi\|213579729\|ref\|ZP_03361555.1\| Hha protein [Salmonella enterica subsp. enterica serovar Typhi str. ... gi\|213427134 - gi\|213427134\|ref\|ZP_03359884.1\| Hha protein [Salmonella enterica subsp. enterica serovar Typhi str. ... gi\|213162901 - gi\|213162901\|ref\|ZP_03348611.1\| Hha protein [Salmonella enterica subsp. enterica serovar Typhi str. ... gi\|224466837, gi... - gi\|224582310\|ref\|YP_002636108.1\| hemolysin expression modulating protein [Salmonella enterica subsp.... gi\|218357413, gi... - gi\|218549872\|ref\|YP_002383663.1\| hemolysin expression-modulating protein [Escherichia fergusonii ATC... gi\|213974347 - gi\|213974347\|ref\|ZP_03401606.1\| Hha protein [Salmonella enterica subsp. enterica serovar Typhi str. ... gi\|213855677 - gi\|213855677\|ref\|ZP_03383917.1\| Hha protein [Salmonella enterica subsp. enterica serovar Typhi str. ... gi\|199602449, gi... - gi\|200390004\|ref\|ZP_03216615.1\| hemolysin expression modulating protein [Salmonella enterica subsp. ... gi\|198242168, gi... - gi\|198242168\|ref\|YP_002214426.1\| haemolysin expression modulating protein [Salmonella enterica subsp... gi\|197363292, gi... - gi\|197363292\|ref\|YP_002142929.1\| hemolysin expression-modulating protein [Salmonella enterica subsp.... gi\|197262964, gi... - gi\|197262964\|ref\|ZP_03163038.1\| haemolysin expression modulating protein [Salmonella enterica subsp.... gi\|213022096 - gi\|213022096\|ref\|ZP_03336543.1\| Hha protein [Salmonella enterica subsp. enterica serovar Typhi str. ... gi\|207855952, gi... - gi\|207855952\|ref\|YP_002242603.1\| hemolysin expression-modulating protein [Salmonella enterica subsp.... gi\|205271562, gi... - gi\|205351781\|ref\|YP_002225582.1\| hemolysin expression-modulating protein [Salmonella enterica subsp.... gi\|204320495, gi... - gi\|204930561\|ref\|ZP_03221491.1\| hemolysin expression modulating protein [Salmonella enterica subsp. ... gi\|16759453 - gi\|16759453\|ref\|NP_455070.1\| hemolysin expression-modulating protein [Salmonella enterica subsp. ent... gi\|7677481\|gb\|AA... - Hha [Salmonella typhimurium] gi\|62126718, gi\|... - gi\|62179085\|ref\|YP_215502.1\| hemolysin expression-modulating protein [Salmonella enterica subsp. ent... gi\|56128629, gi\|... - gi\|56414372\|ref\|YP_151447.1\| hemolysin expression-modulating protein [Salmonella enterica subsp. ent... gi\|16418980, gi\|... - gi\|16763853\|ref\|NP_459468.1\| hemolysin expression-modulating protein [Salmonella typhimurium LT2], g... gi\|29138407, gi\|... - gi\|29142775\|ref\|NP_806117.1\| hemolysin expression-modulating protein [Salmonella enterica subsp. ent... gi\|238911397 - gi\|238911397\|ref\|ZP_04655234.1\| modulator of gene expression, with H-NS [Salmonella enterica subsp. ... gi\|7677481 - gi\|7677481\|gb\|AAF67181.1\|AF242359_1 Hha [Salmonella typhimurium] gi\|16501745, gi\|... - gi\|25324713\|pir\|\|AD0561 haemolysin expression modulating protein [imported] - Salmonella enterica su... gi\|194402018, gi... - gi\|194443355\|ref\|YP_002039716.1\| haemolysin expression modulating protein [Salmonella enterica subsp... gi\|170767694, gi... - gi\|170767694\|ref\|ZP_02902147.1\| haemolysin expression modulating protein [Escherichia albertii TW076... gi\|205344032, gi... - gi\|205344032\|gb\|EDZ30796.1\| hemolysin expression modulating protein [Salmonella enterica subsp. ente... gi\|168465568, gi... - gi\|195631992\|gb\|EDX50512.1\| hemolysin expression modulating protein [Salmonella enterica subsp. ente... gi\|197248594, gi... - gi\|197248594\|ref\|YP_002145454.1\| haemolysin expression modulating protein [Salmonella enterica subsp... lcl\|NC_016856.1_... - [gene=hha] [protein=hemolysin expression-modulating protein] [protein_id=YP_005236170.1] [location=c... gi\|194738349, gi... - gi\|194738349\|ref\|YP_002113504.1\| haemolysin expression modulating protein [Salmonella enterica subsp... gi\|194472363, gi... - gi\|194472363\|ref\|ZP_03078347.1\| haemolysin expression modulating protein [Salmonella enterica subsp.... gi\|194410060, gi... - gi\|194451756\|ref\|YP_002044507.1\| hemolysin expression-modulating protein [Salmonella enterica subsp.... gi\|205330854, gi... - gi\|205330854\|gb\|EDZ17618.1\| hemolysin expression modulating protein [Salmonella enterica subsp. ente... gi\|205323452, gi... - gi\|205323452\|gb\|EDZ11291.1\| hemolysin expression modulating protein [Salmonella enterica subsp. ente... gi\|161615331, gi... - gi\|161615331\|ref\|YP_001589296.1\| hemolysin expression-modulating protein [Salmonella enterica subsp.... gi\|160865698, gi... - gi\|161504351\|ref\|YP_001571463.1\| hemolysin expression-modulating protein [Salmonella enterica subsp.... gi\|205349698, gi... - gi\|205349698\|gb\|EDZ36329.1\| hemolysin expression modulating protein [Salmonella enterica subsp. ente... gi\|168240303, gi... - gi\|205340242\|gb\|EDZ27006.1\| hemolysin expression modulating protein [Salmonella enterica subsp. ente... gi\|168237588, gi... - gi\|197289517\|gb\|EDY28880.1\| hemolysin expression modulating protein [Salmonella enterica subsp. ente... gi\|205333948, gi... - gi\|205333948\|gb\|EDZ20712.1\| hemolysin expression modulating protein [Salmonella enterica subsp. ente...	117.0	[0..1]	[72..1]
gi\|253782325, gi... - gi\|253990875\|ref\|YP_003042231.1\| Haemolysin expression modulating protein [Photorhabdus asymbiotica]... gi\|36787149, gi\|... - gi\|37527713\|ref\|NP_931058.1\| hemolysin expression-modulating protein [Photorhabdus luminescens subsp...	115.0	[0..6]	[72..1]
gi\|38639695, gi\|... - gi\|38639695\|ref\|NP_943464.1\| hemolysin expression-modulating protein [Klebsiella pneumoniae], gi\|380...	113.0	[0..6]	[72..1]
YMOA_YERPE - Modulating protein YmoA OS=Yersinia pestis GN=ymoA PE=1 SV=1 gi\|62825110 - gi\|62825110\|gb\|AAY16116.1\| YmoA [Yersinia intermedia] gi\|62825108 - gi\|62825108\|gb\|AAY16115.1\| YmoA [Yersinia frederiksenii] gi\|77974283 - gi\|77974283\|ref\|ZP_00829824.1\| hypothetical protein YfreA_01001863 [Yersinia frederiksenii ATCC 3364... gi\|162351064, gi... - gi\|77635244\|ref\|ZP_00797331.1\| hypothetical protein YpesA_01001409 [Yersinia pestis Angola], gi\|1624... gi\|152960419, gi... - gi\|77631946\|ref\|ZP_00794532.1\| hypothetical protein YpseI_01003336 [Yersinia pseudotuberculosis IP 3... gi\|165989985, gi... - gi\|166010985\|ref\|ZP_02231883.1\| haemolysin expression modulating protein [Yersinia pestis biovar Ant... gi\|165927647, gi... - gi\|165927647\|ref\|ZP_02223479.1\| hemolysin expression modulating protein [Yersinia pestis biovar Orie... gi\|167399288, gi... - gi\|167399288\|ref\|ZP_02304812.1\| haemolysin expression modulating protein [Yersinia pestis biovar Ant... gi\|166205704, gi... - gi\|166212917\|ref\|ZP_02238952.1\| haemolysin expression modulating protein [Yersinia pestis biovar Ant... gi\|167423614, gi... - gi\|167423614\|ref\|ZP_02315367.1\| hemolysin expression modulating protein [Yersinia pestis biovar Medi... gi\|166960492, gi... - gi\|167421573\|ref\|ZP_02313326.1\| hemolysin expression modulating protein [Yersinia pestis biovar Orie... gi\|21957794, gi\|... - gi\|22124953\|ref\|NP_668376.1\| hemolysin expression-modulating protein [Yersinia pestis KIM], gi\|21957... gi\|51595328, gi\|... - gi\|51595328\|ref\|YP_069519.1\| hemolysin expression-modulating protein [Yersinia pseudotuberculosis IP... gi\|45440642, gi\|... - gi\|45440642\|ref\|NP_992181.1\| hemolysin expression-modulating protein [Yersinia pestis biovar Microtu... gi\|149291429, gi... - gi\|149365016\|ref\|ZP_01887051.1\| modulating protein YmoA (histone-like protein) [Yersinia pestis CA88... YMOA_YEREN - Modulating protein YmoA OS=Yersinia enterocolitica GN=ymoA PE=3 SV=1 gi\|145211728, gi... - gi\|145600032\|ref\|YP_001164108.1\| hemolysin expression-modulating protein [Yersinia pestis Pestoides ... gi\|15981076, gi\|... - gi\|218930168\|ref\|YP_002348043.1\| hemolysin expression-modulating protein [Yersinia pestis CO92], gi\|... gi\|169751965, gi... - gi\|170025431\|ref\|YP_001721936.1\| hemolysin expression-modulating protein [Yersinia pseudotuberculosi... gi\|167470956 - gi\|167470956\|ref\|ZP_02335660.1\| haemolysin expression modulating protein [Yersinia pestis FV-1] gi\|186894346, gi... - gi\|186894346\|ref\|YP_001871458.1\| hemolysin expression-modulating protein [Yersinia pseudotuberculosi... gi\|108808624, gi... - gi\|108808624\|ref\|YP_652540.1\| hemolysin expression-modulating protein [Yersinia pestis Antiqua], gi\|... gi\|108774765, gi... - gi\|229901348\|ref\|ZP_04516470.1\| hemolysin expression modulating protein [Yersinia pestis Nepal516], ... gi\|229695106, gi... - gi\|229838740\|ref\|ZP_04458899.1\| hemolysin expression modulating protein [Yersinia pestis biovar Orie... gi\|229896107, gi... - gi\|229896107\|ref\|ZP_04511277.1\| hemolysin expression modulating protein [Yersinia pestis Pestoides A... Q66DR5\|Q66DR5_YERPS - Hemolysin expression modulating protein - Yersinia pseudotuberculosis gi\|229899308, gi... - gi\|229899308\|ref\|ZP_04514451.1\| hemolysin expression modulating protein [Yersinia pestis biovar Orie... gi\|89102020, gi\|... - gi\|89102020\|ref\|ZP_01174690.1\| hypothetical protein Ypesb_01003933 [Yersinia pestis biovar Orientali... gi\|238759242, gi... - gi\|238759242\|ref\|ZP_04620409.1\| Hemolysin expression-modulating protein [Yersinia aldovae ATCC 35236... gi\|238783590, gi... - gi\|238783590\|ref\|ZP_04627611.1\| Hemolysin expression-modulating protein [Yersinia bercovieri ATCC 43... gi\|238729068, gi... - gi\|238791452\|ref\|ZP_04635090.1\| Hemolysin expression-modulating protein [Yersinia intermedia ATCC 29... gi\|238795523, gi... - gi\|238795523\|ref\|ZP_04639038.1\| Hemolysin expression-modulating protein [Yersinia mollaretii ATCC 43... gi\|123443323, gi... - gi\|123443323\|ref\|YP_001007297.1\| hemolysin expression-modulating protein [Yersinia enterocolitica su...	111.0	[0..6]	[72..1]

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Predicted Domain #1

Region A:
Residues: [1-72]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEKPLTKTD YLMRLRRCQT IDTLERVIEK NKYELSDNEL AVFYSAADHR LAELTMNKLY  60
   61 DKIPSSVWKF IR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.0
Match:	1jw2A
Description:	Hemolysin expression modulating protein HHA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits