YRC Public Data Repository - Protein Structure Prediction

Protein:	HEMZ_ECOLI, HEMH...
Organism:	Escherichia coli
Length:	320 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HEMZ_ECOLI, HEMH....

Description	E-value	Query Range	Subject Range
gi\|91189570, gi\|... - gi\|91225920\|ref\|ZP_01260889.1\| ferrochelatase [Vibrio alginolyticus 12G01], gi\|91189570\|gb\|EAS75846....	375.0	[0..3]	[318..4]
gi\|116184515, gi... - gi\|75854980\|ref\|ZP_00762646.1\| COG0276: Protoheme ferro-lyase (ferrochelatase) [Vibrio sp. Ex25], gi...	372.0	[0..3]	[318..4]
gi\|90416219, gi\|... - gi\|90416219\|ref\|ZP_01224151.1\| Protoheme ferro-lyase [marine gamma proteobacterium HTCC2207], gi\|903... gi\|90416219\|ref\|... - Protoheme ferro-lyase [marine gamma proteobacterium HTCC2207]	371.0	[0..3]	[319..15]
gi\|68547417, gi\|... - gi\|68547417\|ref\|ZP_00586954.1\| Ferrochelatase [Shewanella amazonensis SB2B], gi\|68514935\|gb\|EAN38659...	370.0	[0..7]	[318..3]
HEMH_ALTMD - Ferrochelatase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=hemH PE=3 SV=1	369.0	[0..2]	[318..13]
gi\|78505530, gi\|... - gi\|78686770\|ref\|ZP_00851533.1\| Ferrochelatase [Shewanella sp. ANA-3], gi\|78505530\|gb\|EAP19060.1\| Fer...	369.0	[0..3]	[318..19]
HEMH_YEREN - Ferrochelatase OS=Yersinia enterocolitica GN=hemH PE=3 SV=2	369.0	[0..1]	[319..1]
HEMZ_VIBPA, HEMH... - (Q87RH3) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme synthetase), Ferrochelatase OS=V... HEMH_VIBPA - Ferrochelatase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=hemH PE=3 SV=1	369.0	[0..2]	[318..3]
gi\|114773224, gi... - gi\|114773224\|ref\|ZP_01450459.1\| Protoheme ferro-lyase [alpha proteobacterium HTCC2255], gi\|114546343... gi\|114773224 - gi\|114773224\|ref\|ZP_01450459.1\| Protoheme ferro-lyase [alpha proteobacterium HTCC2255]	369.0	[0..2]	[318..13]
gi\|82498549, gi\|... - gi\|82498549\|ref\|ZP_00884038.1\| Ferrochelatase [Shewanella sp. MR-4], gi\|82403456\|gb\|EAP44188.1\| Ferr...	368.0	[0..3]	[318..19]

Back

Predicted Domain #1

Region A:
Residues: [1-320]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRQTKTGILL ANLGTPDAPT PEAVKRYLKQ FLSDRRVVDT SRLLWWPLLR GVILPLRSPR  60
   61 VAKLYASVWM EGGSPLMVYS RQQQQALAQR LPEMPVALGM SYGSPSLESA VDELLAEHVD 120
  121 HIVVLPLYPQ FSCSTVGAVW DELARILARK RSIPGISFIR DYADNHDYIN ALANSVRASF 180
  181 AKHGEPDLLL LSYHGIPQRY ADEGDDYPQR CRTTTRELAS ALGMAPEKVM MTFQSRFGRE 240
  241 PWLMPYTDET LKMLGEKGVG HIQVMCPGFA ADCLETLEEI AEQNREVFLG AGGKKYEYIP 300
  301 ALNATPEHIE MMANLVAAYR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	82.39794
Match:	2po7A
Description:	No description for 2po7A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits