YRC Public Data Repository - Protein Structure Prediction

Protein:	HDFR_ECOLI
Organism:	Escherichia coli
Length:	279 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HDFR_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|91191158, gi\|... - gi\|91224247\|ref\|ZP_01259510.1\| putative transcription regulator protein [Vibrio alginolyticus 12G01]...	227.0	[0..1]	[275..1]
gi\|28900071, gi\|... - gi\|28900071\|ref\|NP_799726.1\| putative transcription regulator protein [Vibrio parahaemolyticus RIMD ... gi\|28808354 - gi\|28808354\|dbj\|BAC61559.1\| putative transcription regulator protein [Vibrio parahaemolyticus RIMD 2...	226.0	[0..1]	[275..1]
gi\|116185384, gi... - gi\|75856032\|ref\|ZP_00763668.1\| COG0583: Transcriptional regulator [Vibrio sp. Ex25], gi\|254227935\|re...	226.0	[0..1]	[275..1]
gi\|89209186, gi\|... - gi\|89209186\|ref\|ZP_01187638.1\| regulatory protein, LysR:LysR, substrate-binding [Bacillus weihenstep...	225.0	[0..1]	[274..9]
gi\|114045851, gi... - gi\|78689367\|ref\|ZP_00854030.1\| transcriptional regulator, LysR family [Shewanella sp. MR-7], gi\|7851...	224.0	[0..1]	[275..1]
gi\|228901018, gi... - gi\|228901018\|ref\|ZP_04065229.1\| Transcriptional regulator, LysR [Bacillus thuringiensis IBL 4222], g... gi\|218541706, gi... - gi\|218897372\|ref\|YP_002445783.1\| transcriptional regulator, LysR family [Bacillus cereus G9842], gi\|... gi\|228965395, gi... - gi\|228965395\|ref\|ZP_04126485.1\| Transcriptional regulator, LysR [Bacillus thuringiensis serovar sott... gi\|74491626, gi\|... - gi\|75760891\|ref\|ZP_00740903.1\| Transcriptional regulators, LysR family [Bacillus thuringiensis serov...	223.0	[0..1]	[273..4]
gi\|87118407, gi\|... - gi\|87118407\|ref\|ZP_01074306.1\| putative transcription regulator protein [Marinomonas sp. MED121], gi...	223.0	[0..3]	[275..4]
gi\|229127805, gi... - gi\|229127805\|ref\|ZP_04256791.1\| Transcriptional regulator, LysR [Bacillus cereus BDRD-Cer4], gi\|2286... gi\|30020498, gi\|... - gi\|30020498\|ref\|NP_832129.1\| LysR family transcriptional regulator [Bacillus cereus ATCC 14579], gi\|...	223.0	[0..1]	[274..4]
gi\|49329257, gi\|... - gi\|49477701\|ref\|YP_036558.1\| LysR family transcriptional regulator [Bacillus thuringiensis serovar k...	222.0	[0..1]	[274..4]
gi\|117614564, gi... - gi\|78685922\|ref\|ZP_00850696.1\| transcriptional regulator, LysR family [Shewanella sp. ANA-3], gi\|785...	222.0	[0..3]	[275..4]

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Predicted Domain #1

Region A:
Residues: [1-279]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTELLKTFL EVSRTRHFGR AAESLYLTQS AVSFRIRQLE NQLGVNLFTR HRNNIRLTAA  60
   61 GEKLLPYAET LMSTWQAARK EVAHTSRHNE FSIGASASLW ECMLNQWLGR LYQNQDAHTG 120
  121 LQFEARIAQR QSLVKQLHER QLDLLITTEA PKMDEFSSQL LGYFTLALYT SAPSKLKGDL 180
  181 NYLRLEWGPD FQQHEAGLIG ADEVPILTTS SAELAQQQIA MLNGCTWLPV SWARKKGGLH 240
  241 TVVDSTTLSR PLYAIWLQNS DKNALIRDLL KINVLDEVY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.69897
Match:	2h99A
Description:	No description for 2h99A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits