YRC Public Data Repository - Protein Structure Prediction

Protein:	HDEB_ECOLI
Organism:	Escherichia coli
Length:	108 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HDEB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|82778662, gi\|... - gi\|82778662\|ref\|YP_405011.1\| acid-resistance protein [Shigella dysenteriae Sd197], gi\|81242810\|gb\|AB...	189.0	[0..1]	[108..5]
gi\|215266858, gi... - gi\|215488786\|ref\|YP_002331217.1\| acid-resistance protein [Escherichia coli O127:H6 str. E2348/69], g... gi\|91213014, gi\|... - gi\|91213014\|ref\|YP_543000.1\| acid-resistance protein [Escherichia coli UTI89], gi\|91074588\|gb\|ABE094... gi\|81247284, gi\|... - gi\|82545873\|ref\|YP_409820.1\| acid-resistance protein [Shigella boydii Sb227], gi\|81247284\|gb\|ABB6799... gi\|75231643, gi\|... - gi\|75231643\|ref\|ZP_00718001.1\| hypothetical protein EcolB7_01000327 [Escherichia coli B7A], gi\|19116... gi\|75211875, gi\|... - gi\|75211875\|ref\|ZP_00711939.1\| hypothetical protein EcolB_01001232 [Escherichia coli B171], gi\|19442... gi\|157162987, gi... - gi\|75197428\|ref\|ZP_00707498.1\| hypothetical protein EcolH_01003245 [Escherichia coli HS], gi\|1571629... gi\|75188275, gi\|... - gi\|75188275\|ref\|ZP_00701542.1\| hypothetical protein EcolE_01001520 [Escherichia coli E24377A], gi\|15... gi\|74313945, gi\|... - gi\|74313945\|ref\|YP_312364.1\| acid-resistance protein [Shigella sonnei Ss046], gi\|73857422\|gb\|AAZ9012... gi\|75260203 - gi\|75260203\|ref\|ZP_00731471.1\| hypothetical protein EcolE2_01000090 [Escherichia coli E22] gi\|75242696, gi\|... - gi\|75242696\|ref\|ZP_00726440.1\| hypothetical protein EcolF_01000609 [Escherichia coli F11], gi\|191170... gi\|192958149, gi... - gi\|75237450\|ref\|ZP_00721483.1\| hypothetical protein EcolE1_01001527 [Escherichia coli E110019], gi\|1... gi\|466646\|gb\|AAB... - alternate name 10K-S of D11109 [Escherichia coli] gi\|117625791, gi... - gi\|117625791\|ref\|YP_859114.1\| acid-resistance protein [Escherichia coli APEC O1], gi\|115514915\|gb\|AB... gi\|187730547, gi... - gi\|75179864\|ref\|ZP_00699851.1\| hypothetical protein SboyB_01000191 [Shigella boydii BS512], gi\|18773... gi\|194425274, gi... - gi\|83588633\|ref\|ZP_00927257.1\| hypothetical protein Ecol1_01000265 [Escherichia coli 101-1], gi\|1944... gi\|83571545 - gi\|83571545\|ref\|ZP_00922985.1\| hypothetical protein Sdys1_01000255 [Shigella dysenteriae 1012] gi\|227839547, gi... - gi\|227883668\|ref\|ZP_04001473.1\| acid-resistance protein [Escherichia coli 83972], gi\|227839547\|gb\|EE... gi\|237703275, gi... - gi\|237703275\|ref\|ZP_04533756.1\| hdeB [Escherichia sp. 3_2_53FAA], gi\|226902539\|gb\|EEH88798.1\| hdeB [... gi\|253322706, gi... - gi\|253771662\|ref\|YP_003034493.1\| acid-resistance protein [Escherichia coli BL21(DE3)], gi\|253322706\|... gi\|226839190, gi... - gi\|254038684\|ref\|ZP_04872740.1\| acid-resistance protein [Escherichia sp. 1_1_43], gi\|226839190\|gb\|EE... gi\|216432, gi\|20... - gi\|466646\|gb\|AAB18485.1\| alternate name 10K-S of D11109 [Escherichia coli str. K-12 substr. MG1655],... gi\|24054004, gi\|... - gi\|24114781\|ref\|NP_709291.1\| acid-resistance protein [Shigella flexneri 2a str. 301], gi\|24054004\|gb... gi\|26110571, gi\|... - gi\|26250142\|ref\|NP_756182.1\| acid-resistance protein [Escherichia coli CFT073], gi\|26110571\|gb\|AAN82... gi\|30043468, gi\|... - gi\|30065206\|ref\|NP_839377.1\| acid-resistance protein [Shigella flexneri 2a str. 2457T], gi\|30043468\|... gi\|1789925, gi\|1... - gb\|AAC76534.1\| orf, hypothetical protein; conserved hypothetical protein [Escherichia coli K12], gi...	189.0	[0..1]	[108..5]
gi\|188495721, gi... - gi\|75516030\|ref\|ZP_00738148.1\| hypothetical protein Ecol5_01000089 [Escherichia coli 53638], gi\|1884...	188.0	[0..1]	[108..5]
gi\|208813481, gi... - gi\|208813481\|ref\|ZP_03254810.1\| HdeB protein [Escherichia coli O157:H7 str. EC4045], gi\|208734758\|gb... gi\|208740739, gi... - gi\|208820616\|ref\|ZP_03260936.1\| HdeB protein [Escherichia coli O157:H7 str. EC4042], gi\|208740739\|gb... gi\|15833643, gi\|... - gi\|15833643\|ref\|NP_312416.1\| hypothetical protein ECs4389 [Escherichia coli O157:H7], gi\|13363863\|db... gi\|209397371, gi... - gi\|209397371\|ref\|YP_002272985.1\| HdeB protein [Escherichia coli O157:H7 str. EC4115], gi\|209158771\|g... gi\|209755622, gi... - pir\|\|F86023 hypothetical protein hdeB [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|217324848, gi... - gi\|217324848\|ref\|ZP_03440932.1\| HdeB protein [Escherichia coli O157:H7 str. TW14588], gi\|217321069\|g... gi\|189374259, gi... - gi\|189374259\|gb\|EDU92675.1\| HdeB protein [Escherichia coli O157:H7 str. EC869], gi\|168785371\|ref\|ZP_... gi\|254795461, gi... - gi\|254795461\|ref\|YP_003080298.1\| acid-resistance protein [Escherichia coli O157:H7 str. TW14359], gi... gi\|15804053, gi\|... - gi\|15804053\|ref\|NP_290089.1\| acid-resistance protein [Escherichia coli O157:H7 EDL933], gi\|12518218\|... gi\|168797336, gi... - gi\|189380093\|gb\|EDU98509.1\| HdeB protein [Escherichia coli O157:H7 str. EC508], gi\|168797336\|ref\|ZP_... gi\|195935036 - gi\|195935036\|ref\|ZP_03080418.1\| acid-resistance protein [Escherichia coli O157:H7 str. EC4024] gi\|208729127, gi... - gi\|208809326\|ref\|ZP_03251663.1\| HdeB protein [Escherichia coli O157:H7 str. EC4206], gi\|208729127\|gb... gi\|189369863, gi... - gi\|189369863\|gb\|EDU88279.1\| HdeB protein [Escherichia coli O157:H7 str. EC4501], gi\|168759589\|ref\|ZP... gi\|168765913, gi... - gi\|189364411\|gb\|EDU82830.1\| HdeB protein [Escherichia coli O157:H7 str. EC4486], gi\|168765913\|ref\|ZP... gi\|168772541, gi... - gi\|187771379\|gb\|EDU35223.1\| HdeB protein [Escherichia coli O157:H7 str. EC4196], gi\|168772541\|ref\|ZP... gi\|168779649, gi... - gi\|189002311\|gb\|EDU71297.1\| HdeB protein [Escherichia coli O157:H7 str. EC4076], gi\|168779649\|ref\|ZP... gi\|188018353, gi... - gi\|188018353\|gb\|EDU56475.1\| HdeB protein [Escherichia coli O157:H7 str. EC4113], gi\|168746956\|ref\|ZP... gi\|168753318, gi... - gi\|189359360\|gb\|EDU77779.1\| HdeB protein [Escherichia coli O157:H7 str. EC4401], gi\|168753318\|ref\|ZP... gi\|15833643, gi\|... - gi\|15833643\|ref\|NP_312416.1\| acid-resistance protein [Escherichia coli O157:H7 str. Sakai], gi\|13363...	188.0	[0..1]	[108..5]
gi\|62180133, gi\|... - gi\|62180133\|ref\|YP_216550.1\| acid-resistance protein [Salmonella enterica subsp. enterica serovar Ch... gi\|213981981 - gi\|213981981\|ref\|ZP_03409240.1\| acid-resistance protein [Salmonella enterica subsp. enterica serovar... gi\|214001406 - gi\|214001406\|ref\|ZP_03412141.1\| acid-resistance protein [Salmonella enterica subsp. enterica serovar... gi\|224583944, gi... - gi\|224583944\|ref\|YP_002637742.1\| putative secreted protein [Salmonella enterica subsp. enterica sero... lcl\|NC_016856.1_... - [gene=hdeB] [protein=acid-resistance protein] [protein_id=YP_005237452.1] [location=complement(16535... gi\|213426461 - gi\|213426461\|ref\|ZP_03359211.1\| acid-resistance protein [Salmonella enterica subsp. enterica serovar... gi\|213580039 - gi\|213580039\|ref\|ZP_03361865.1\| acid-resistance protein [Salmonella enterica subsp. enterica serovar... gi\|213649201 - gi\|213649201\|ref\|ZP_03379254.1\| acid-resistance protein [Salmonella enterica subsp. enterica serovar... gi\|213864710 - gi\|213864710\|ref\|ZP_03386829.1\| acid-resistance protein [Salmonella enterica subsp. enterica serovar... gi\|56413492, gi\|... - gi\|56413492\|ref\|YP_150567.1\| acid-resistance protein [Salmonella enterica subsp. enterica serovar Pa... gi\|205335310, gi... - gi\|205335310\|gb\|EDZ22074.1\| protein HdeB [Salmonella enterica subsp. enterica serovar Kentucky str. ... gi\|168235663, gi... - gi\|197290998\|gb\|EDY30351.1\| protein HdeB [Salmonella enterica subsp. enterica serovar Schwarzengrund... gi\|205339125, gi... - gi\|205339125\|gb\|EDZ25889.1\| protein HdeB [Salmonella enterica subsp. enterica serovar Heidelberg str... gi\|168260261, gi... - gi\|205350816\|gb\|EDZ37447.1\| protein HdeB [Salmonella enterica subsp. enterica serovar Hadar str. RI_... gi\|161613998, gi... - gi\|161613998\|ref\|YP_001587963.1\| acid-resistance protein [Salmonella enterica subsp. enterica serova... gi\|167549977, gi... - gi\|205325087\|gb\|EDZ12926.1\| protein HdeB [Salmonella enterica subsp. enterica serovar Saintpaul str.... gi\|205328942, gi... - gi\|205328942\|gb\|EDZ15706.1\| protein HdeB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- s... gi\|29137551, gi\|... - gi\|29141922\|ref\|NP_805264.1\| acid-resistance protein [Salmonella enterica subsp. enterica serovar Ty... gi\|16760313 - gi\|16760313\|ref\|NP_455930.1\| acid-resistance protein [Salmonella enterica subsp. enterica serovar Ty... gi\|25333362, gi\|... - gi\|25333362\|pir\|\|AG0673 probable secreted protein STY1501 [imported] - Salmonella enterica subsp. en... gi\|16764906, gi\|... - gi\|16764906\|ref\|NP_460521.1\| acid-resistance protein [Salmonella typhimurium LT2], gi\|16420084\|gb\|AA... gi\|205352752, gi... - gi\|205352752\|ref\|YP_002226553.1\| acid-resistance protein [Salmonella enterica subsp. enterica serova... gi\|238911797 - gi\|238911797\|ref\|ZP_04655634.1\| acid-resistance protein [Salmonella enterica subsp. enterica serovar... gi\|206708746, gi... - gi\|207856943\|ref\|YP_002243594.1\| acid-resistance protein [Salmonella enterica subsp. enterica serova... gi\|213052171 - gi\|213052171\|ref\|ZP_03345049.1\| acid-resistance protein [Salmonella enterica subsp. enterica serovar... gi\|213421692 - gi\|213421692\|ref\|ZP_03354758.1\| acid-resistance protein [Salmonella enterica subsp. enterica serovar... gi\|197362417, gi... - gi\|197362417\|ref\|YP_002142054.1\| acid-resistance protein [Salmonella enterica subsp. enterica serova... gi\|198241810, gi... - gi\|198241810\|ref\|YP_002215584.1\| protein HdeB [Salmonella enterica subsp. enterica serovar Dublin st... gi\|199602580, gi... - gi\|200390135\|ref\|ZP_03216746.1\| protein HdeB [Salmonella enterica subsp. enterica serovar Virchow st... gi\|204323260, gi... - gi\|204927918\|ref\|ZP_03219119.1\| protein HdeB [Salmonella enterica subsp. enterica serovar Javiana st... gi\|194471569, gi... - gi\|194471569\|ref\|ZP_03077553.1\| protein HdeB [Salmonella enterica subsp. enterica serovar Kentucky s... gi\|194709884, gi... - gi\|194734382\|ref\|YP_002114585.1\| protein HdeB [Salmonella enterica subsp. enterica serovar Schwarzen... gi\|197250404, gi... - gi\|197250404\|ref\|YP_002146475.1\| protein HdeB [Salmonella enterica subsp. enterica serovar Agona str... gi\|197240948, gi... - gi\|197262693\|ref\|ZP_03162767.1\| protein HdeB [Salmonella enterica subsp. enterica serovar Saintpaul ... gi\|195634308, gi... - gi\|195634308\|gb\|EDX52660.1\| protein HdeB [Salmonella enterica subsp. enterica serovar Newport str. S... gi\|168819331, gi... - gi\|205343737\|gb\|EDZ30501.1\| protein HdeB [Salmonella enterica subsp. enterica serovar Weltevreden st... gi\|194444627, gi... - gi\|194444627\|ref\|YP_002040810.1\| protein HdeB [Salmonella enterica subsp. enterica serovar Newport s... gi\|194448657, gi... - gi\|194448657\|ref\|YP_002045603.1\| acid-resistance protein [Salmonella enterica subsp. enterica serova...	157.0	[0..1]	[106..1]
gi\|77961639 - gi\|77961639\|ref\|ZP_00825472.1\| hypothetical protein YmolA_01002104 [Yersinia mollaretii ATCC 43969]	131.0	[0..34]	[104..34]
gi\|77957758 - gi\|77957758\|ref\|ZP_00821806.1\| hypothetical protein YberA_01002038 [Yersinia bercovieri ATCC 43970]	130.0	[0..34]	[104..35]
gi\|77973088, gi\|... - gi\|77973088\|ref\|ZP_00828640.1\| hypothetical protein YfreA_01003078 [Yersinia frederiksenii ATCC 3364...	129.0	[0..36]	[104..39]
gi\|149291848, gi... - gi\|149365435\|ref\|ZP_01887470.1\| putative exported protein [Yersinia pestis CA88-4125], gi\|149291848\|... gi\|108780309, gi... - gi\|108808396\|ref\|YP_652312.1\| acid-resistance protein [Yersinia pestis Antiqua], gi\|108780309\|gb\|ABG... gi\|229681498, gi... - gi\|229901569\|ref\|ZP_04516691.1\| putative exported protein [Yersinia pestis Nepal516], gi\|229681498\|g... gi\|229688343, gi... - gi\|229898795\|ref\|ZP_04513940.1\| putative exported protein [Yersinia pestis biovar Orientalis str. In... gi\|229701381, gi... - gi\|229895575\|ref\|ZP_04510746.1\| putative exported protein [Yersinia pestis Pestoides A], gi\|22970138... gi\|229694596, gi... - gi\|229838230\|ref\|ZP_04458389.1\| putative exported protein [Yersinia pestis biovar Orientalis str. PE... gi\|165925327, gi... - gi\|165925327\|ref\|ZP_02221159.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|166008334, gi... - gi\|166008334\|ref\|ZP_02229232.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... Q667Q7\|Q667Q7_YERPS - Putative exported protein precursor - Yersinia pseudotuberculosis gi\|166206542, gi... - gi\|166212611\|ref\|ZP_02238646.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167398992, gi... - gi\|167398992\|ref\|ZP_02304516.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167421336, gi... - gi\|167421336\|ref\|ZP_02313089.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|167423407, gi... - gi\|167423407\|ref\|ZP_02315160.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|167467821 - gi\|167467821\|ref\|ZP_02332525.1\| hypothetical protein YpesF_07969 [Yersinia pestis FV-1] gi\|162418119, gi... - gi\|77635019\|ref\|ZP_00797109.1\| hypothetical protein YpesA_01001641 [Yersinia pestis Angola], gi\|1624... gi\|152960570, gi... - gi\|77629968\|ref\|ZP_00792554.1\| hypothetical protein YpseI_01001324 [Yersinia pseudotuberculosis IP 3... gi\|22125146, gi\|... - gi\|22125146\|ref\|NP_668569.1\| acid-resistance protein [Yersinia pestis KIM], gi\|21958006\|gb\|AAM84820.... gi\|25333360 - pir\|\|AB0326 probable exported protein YPO2674 [imported] - Yersinia pestis (strain CO92) gi\|51597250, gi\|... - gi\|51597250\|ref\|YP_071441.1\| acid-resistance protein [Yersinia pseudotuberculosis IP 32953], gi\|5159... gi\|45437122, gi\|... - gi\|45442258\|ref\|NP_993797.1\| acid-resistance protein [Yersinia pestis biovar Microtus str. 91001], g... gi\|16122879, gi\|... - gi\|218929747\|ref\|YP_002347622.1\| acid-resistance protein [Yersinia pestis CO92], gi\|16122879\|ref\|NP_... gi\|89102191, gi\|... - gi\|89102191\|ref\|ZP_01174844.1\| hypothetical protein Ypesb_01003765 [Yersinia pestis biovar Orientali...	126.0	[0..34]	[104..32]
gi\|77978453, gi\|... - gi\|77978453\|ref\|ZP_00833882.1\| hypothetical protein YintA_01001798 [Yersinia intermedia ATCC 29909],...	125.0	[0..34]	[102..37]

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Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNISSLRKAF IFMGAVAALS LVNAQSALAA NESAKDMTCQ EFIDLNPKAM TPVAWWMLHE  60
   61 ETVYKGGDTV TLNETDLTQI PKVIEYCKKN PQKNLYTFKN QASNDLPN

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.34
Match:	1bg8A
Description:	Protein HNS-dependent expression A; HdeA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits