YRC Public Data Repository - Protein Structure Prediction

Protein:	HDEA_ECOLI
Organism:	Escherichia coli
Length:	110 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HDEA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|227883669, gi... - gi\|227883669\|ref\|ZP_04001474.1\| acid-resistance protein [Escherichia coli 83972], gi\|227839548\|gb\|EE... gi\|226902540, gi... - gi\|237703276\|ref\|ZP_04533757.1\| stress response protein [Escherichia sp. 3_2_53FAA], gi\|226902540\|gb... gi\|215488787, gi... - gi\|215488787\|ref\|YP_002331218.1\| acid-resistance protein [Escherichia coli O127:H6 str. E2348/69], g... gi\|218691794, gi... - gi\|218691794\|ref\|YP_002400006.1\| acid-resistance protein [Escherichia coli ED1a], gi\|218429358\|emb\|C... gi\|218367354, gi... - gi\|218560585\|ref\|YP_002393498.1\| acid-resistance protein [Escherichia coli S88], gi\|218367354\|emb\|CA... gi\|218702275, gi... - gi\|218702275\|ref\|YP_002409904.1\| acid-resistance protein [Escherichia coli IAI39], gi\|218372261\|emb\|... gi\|75242695, gi\|... - gi\|75242695\|ref\|ZP_00726439.1\| hypothetical protein EcolF_01000608 [Escherichia coli F11], gi\|191170... gi\|26110572, gi\|... - gi\|26250143\|ref\|NP_756183.1\| acid-resistance protein [Escherichia coli CFT073], gi\|26110572\|gb\|AAN82... gi\|115514916, gi... - gi\|117625792\|ref\|YP_859115.1\| acid-resistance protein [Escherichia coli APEC O1], gi\|115514916\|gb\|AB... gi\|91213015, gi\|... - gi\|91213015\|ref\|YP_543001.1\| acid-resistance protein [Escherichia coli UTI89], gi\|91074589\|gb\|ABE094... gi\|110643755, gi... - gi\|110643755\|ref\|YP_671485.1\| acid-resistance protein [Escherichia coli 536], gi\|110345347\|gb\|ABG715...	143.0	[0..19]	[110..19]
gi\|6730390, gi\|6... - gi\|6730392\|pdb\|1DJ8\|F Chain F, Crystal Structure Of E. Coli Periplasmic Protein Hdea, gi\|6730391\|pdb...	140.0	[0..22]	[110..1]
HDEA_BRUSU - Probable acid stress chaperone HdeA OS=Brucella suis biovar 1 (strain 1330) GN=hdeA PE=3 SV=1 HDEA_BRUSU - Chaperone-like protein hdeA OS=Brucella suis GN=hdeA PE=2 SV=1	138.0	[0..16]	[106..23]
HDEA_BRUME - Chaperone-like protein hdeA OS=Brucella melitensis GN=hdeA PE=2 SV=2 gi\|189022994, gi... - gi\|189022994\|ref\|YP_001932735.1\| acid-resistance protein [Brucella abortus S19], gi\|189021568\|gb\|ACD... HDEA_BRUME - Probable acid stress chaperone HdeA OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC... gi\|254691242 - gi\|254691242\|ref\|ZP_05154496.1\| acid-resistance protein [Brucella abortus bv. 6 str. 870] gi\|254695455 - gi\|254695455\|ref\|ZP_05157283.1\| acid-resistance protein [Brucella abortus bv. 3 str. Tulya] gi\|225642283, gi... - gi\|225686178\|ref\|YP_002734150.1\| HNS-dependent expression A [Brucella melitensis ATCC 23457], gi\|225... gi\|237788097, gi... - gi\|237817284\|ref\|ZP_04596276.1\| acid-resistance protein [Brucella abortus str. 2308 A], gi\|237788097... HDEA_BRUA2 - Probable acid stress chaperone HdeA OS=Brucella abortus (strain 2308) GN=hdeA PE=1 SV=1 gi\|254702741 - gi\|254702741\|ref\|ZP_05164569.1\| acid-resistance protein [Brucella suis bv. 3 str. 686] gi\|254732476 - gi\|254732476\|ref\|ZP_05191054.1\| acid-resistance protein [Brucella abortus bv. 4 str. 292] HDEA_BRUAB - Chaperone-like protein hdeA OS=Brucella abortus GN=hdeA PE=2 SV=1 gi\|254699029 - gi\|254699029\|ref\|ZP_05160857.1\| acid-resistance protein [Brucella abortus bv. 2 str. 86/8/59] HDEA_BRUAB - Probable acid stress chaperone HdeA OS=Brucella abortus biovar 1 (strain 9-941) GN=hdeA PE=3 SV=1 gi\|254699619 - gi\|254699619\|ref\|ZP_05161447.1\| acid-resistance protein [Brucella suis bv. 5 str. 513] HDEA_BRUSI - Probable acid stress chaperone HdeA OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=hdeA PE=3 S... HDEA_BRUC2 - Probable acid stress chaperone HdeA OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=hdeA PE=3 ...	137.0	[0..16]	[106..23]
gi\|187479095, gi... - gi\|187479095\|ref\|YP_787120.1\| acid-resistance protein, ( chaperone) [Bordetella avium 197N], gi\|1154...	130.0	[0..14]	[100..10]
gi\|25526713 - pir\|\|AI3622 protein hdea precursor [imported] - Brucella melitensis (strain 16M) gi\|17985112, gi\|... - gi\|17989251\|ref\|NP_541884.1\| acid-resistance protein [Brucella melitensis 16M], gi\|17985112\|gb\|AAL54...	121.0	[0..29]	[106..1]
gi\|111282739, gi... - gi\|120608796\|ref\|YP_968474.1\| hypothetical protein Aave_0086 [Acidovorax avenae subsp. citrulli AAC0...	91.0	[0..31]	[88..48]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKVLGVILG GLLLLPVVSN AADAQKAADN KKPVNSWTCE DFLAVDESFQ PTAVGFAEAL  60
   61 NNKDKPEDAV LDVQGIATVT PAIVQACTQD KQANFKDKVK GEWDKIKKDM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.154902
Match:	1bg8A
Description:	Protein HNS-dependent expression A; HdeA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits