YRC Public Data Repository - Protein Structure Prediction

Protein:	HCAF_ECOLI
Organism:	Escherichia coli
Length:	172 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HCAF_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|4105710, gi\|6... - gi\|62738280\|pdb\|1WQL\|B Chain B, Cumene Dioxygenase (Cuma1a2) From Pseudomonas Fluorescens Ip01, gi\|4... gi\|1685014 - gi\|1685014\|gb\|AAB36667.1\| isopropylbenzene-2,3-dioxygenase	170.0	[0..4]	[172..16]
BPHA2_RHOJR - Biphenyl 2,3-dioxygenase subunit beta OS=Rhodococcus jostii (strain RHA1) GN=bphA2 PE=1 SV=1 gi\|55670329, gi\|... - gi\|55670329\|pdb\|1ULJ\|F Chain F, Biphenyl Dioxygenase (Bpha1a2) In Complex With The Substrate, gi\|556...	170.0	[0..3]	[172..16]
gi\|1542961 - gi\|1542961\|gb\|AAB08026.1\| isopropylbenzene 2,3-dioxygenase	168.0	[0..3]	[172..16]
gi\|1245153\|gb\|AA... - biphenyl dioxygenase terminal oxygenase beta subunit BPHE_COMTE - Biphenyl dioxygenase subunit beta OS=Comamonas testosteroni GN=bphE PE=1 SV=1	166.0	[0..2]	[172..14]
BPHA2_PSES1 - Biphenyl dioxygenase subunit beta OS=Pseudomonas sp. (strain KKS102) GN=bphA2 PE=3 SV=1 gi\|391834, gi\|10... - gi\|391834\|dbj\|BAA04138.1\| small subunit of biphenyl dioxygenase [Pseudomonas sp. KKS102], pir\|\|JC243...	166.0	[0..2]	[172..21]
gi\|62485021 - gi\|62485021\|dbj\|BAD95524.1\| benzene dioxygenase small subunit [Rhodococcus opacus]	165.0	[0..3]	[172..16]
gi\|27817714 - gi\|27817714\|emb\|CAD61141.1\| biphenyl 2,3-dioxygenase [Cupriavidus oxalaticus] gi\|70779397 - gi\|70779397\|gb\|AAZ08177.1\| BphA2 [Burkholderia cepacia]	164.0	[0..2]	[172..21]
gi\|120596000, gi... - gi\|84713808\|ref\|ZP_01021417.1\| small terminal subunit of phenylpropionate dioxygenase [Polaromonas n...	164.0	[0..2]	[172..16]

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Predicted Domain #1

Region A:
Residues: [1-172]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAQVSLELH HRISQFLFHE ASLLDDWKFR DWLAQLDEEI RYTMRTTVNA QTRDRRKGVQ  60
   61 PPTTWIFNDT KDQLERRIAR LETGMAWAEE PPSRTRHLIS NCQISETDIP NVFAVRVNYL 120
  121 LYRAQKERDE TFYVGTRFDK VRRLEDDNWR LLERDIVLDQ AVITSHNLSV LF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.69897
Match:	1wqlB
Description:	Cumene dioxygenase (cumA1A2) from Pseudomonas fluorescens IP01
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits