YRC Public Data Repository - Protein Structure Prediction

Protein:	GTRA_ECOLI
Organism:	Escherichia coli
Length:	120 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GTRA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|86608476, gi\|... - gi\|86608476\|ref\|YP_477238.1\| glycosyl transferase, group 2 [Synechococcus sp. JA-2-3B'a(2-13)], gi\|8... gi\|86608476, gi\|... - gi\|86608476\|ref\|YP_477238.1\| glycosyl transferase, group 2 [Cyanobacteria bacterium Yellowstone B-Pr...	97.0	[0..2]	[117..265]
gi\|110604460, gi... - gi\|126179414\|ref\|YP_001047379.1\| dolichyl-phosphate beta-D-mannosyltransferase [Methanoculleus maris...	96.0	[0..4]	[116..246]
gi\|86605768, gi\|... - gi\|86605768\|ref\|YP_474531.1\| glycosyl transferase, group 2 [Cyanobacteria bacterium Yellowstone A-Pr... gi\|86605768, gi\|... - gi\|86605768\|ref\|YP_474531.1\| glycosyl transferase, group 2 [Synechococcus sp. JA-3-3Ab], gi\|86554310...	96.0	[0..5]	[117..268]
gi\|57641844, gi\|... - gi\|57641844\|ref\|YP_184322.1\| fused dolichol-phosphate mannosyltransferase/GtrA-like domain-containin...	92.0	[0..4]	[116..233]
gi\|145593418, gi... - gi\|145593418\|ref\|YP_001157715.1\| GtrA family protein [Salinispora tropica CNB-440], gi\|145302755\|gb\|...	92.0	[0..1]	[116..116]
gi\|152967850, gi... - gi\|69288624\|ref\|ZP_00618390.1\| GtrA-like protein [Kineococcus radiotolerans SRS30216], gi\|67986018\|g...	92.0	[0..1]	[116..19]
gi\|18891964, gi\|... - gi\|18976430\|ref\|NP_577787.1\| dolichol monophosphate mannose synthase [Pyrococcus furiosus DSM 3638],...	91.0	[0..4]	[116..233]
gi\|110820592, gi... - gi\|111021062\|ref\|YP_704034.1\| hypothetical protein RHA1_ro04079 [Rhodococcus jostii RHA1], gi\|110820...	90.0	[0..1]	[117..53]
gi\|86566282, gi\|... - gi\|86739420\|ref\|YP_479820.1\| GtrA-like protein [Frankia sp. CcI3], gi\|86566282\|gb\|ABD10091.1\| GtrA-l...	90.0	[0..1]	[116..34]
gi\|14590004, gi\|... - gi\|3256436\|dbj\|BAA29119.1\| 353aa long hypothetical dolichol-phosphate mannosyltransferase [Pyrococcu... gi\|7446793 - pir\|\|H71223 probable dolichol-phosphate mannosyltransferase - Pyrococcus horikoshii	90.0	[0..4]	[116..233]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKLFAKYTS IGVLNTLIHW VVFGVCIYVA HTNQALANFA GFVVAVSFSF FANAKFTFKA  60
   61 STTTMRYMLY VGFMGTLSAT VGWAADRCAL PPMITLVTFS AISLVCGFVY SKFIVFRDAK 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	27.744727
Match:	PF04138.5
Description:	No description for PF04138.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.901	0.032	transport	a.7.8	GAT domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits