YRC Public Data Repository - Protein Structure Prediction

Protein:	GSPJ_ECOLI
Organism:	Escherichia coli
Length:	195 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GSPJ_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|107102647 - gi\|107102647\|ref\|ZP_01366565.1\| hypothetical protein PaerPA_01003712 [Pseudomonas aeruginosa PACS2]	155.0	[0..2]	[195..1]
gi\|26249926, gi\|... - gi\|26249926\|ref\|NP_755966.1\| general secretion pathway protein J precursor [Escherichia coli CFT073]... gi\|227839606, gi... - gi\|227883462\|ref\|ZP_04001267.1\| general secretion pathway protein J precursor [Escherichia coli 8397...	155.0	[0..1]	[195..1]
gi\|149746471, gi... - gi\|153839994\|ref\|ZP_01992661.1\| general secretion pathway protein J [Vibrio parahaemolyticus AQ3810]... gi\|28896913, gi\|... - gi\|28896913\|ref\|NP_796518.1\| general secretion pathway protein J [Vibrio parahaemolyticus RIMD 22106... gi\|28805121 - gi\|28805121\|dbj\|BAC58402.1\| general secretion pathway protein J [Vibrio parahaemolyticus RIMD 221063...	155.0	[0..2]	[193..12]
gi\|194439975, gi... - gi\|83584683\|ref\|ZP_00923349.1\| COG4795: Type II secretory pathway, component PulJ [Escherichia coli ...	155.0	[0..1]	[195..1]
gi\|91212768, gi\|... - gi\|91212768\|ref\|YP_542754.1\| general secretion pathway protein J precursor [Escherichia coli UTI89],... gi\|110345162, gi... - gi\|110643570\|ref\|YP_671300.1\| general secretion pathway protein J precursor [Escherichia coli 536], ... gi\|226902325, gi... - gi\|237703061\|ref\|ZP_04533542.1\| general secretion pathway protein J [Escherichia sp. 3_2_53FAA], gi\|... gi\|117625609, gi... - gi\|117625609\|ref\|YP_858932.1\| putative general secretion pathway protein J precursor [Escherichia co... gi\|218367161, gi... - gi\|218560392\|ref\|YP_002393305.1\| putative general secretory pathway component, cryptic [Escherichia ... gi\|218691616, gi... - gi\|218691616\|ref\|YP_002399828.1\| putative general secretory pathway component, cryptic [Escherichia ... gi\|191171608, gi... - gi\|75241576\|ref\|ZP_00725421.1\| COG4795: Type II secretory pathway, component PulJ [Escherichia coli ...	155.0	[0..1]	[195..1]
gi\|75197264, gi\|... - gi\|75197264\|ref\|ZP_00707334.1\| COG4795: Type II secretory pathway, component PulJ [Escherichia coli ...	154.0	[0..1]	[195..1]
gi\|84378759, gi\|... - gi\|84386335\|ref\|ZP_00989363.1\| Type II secretory pathway, component EpsJ [Vibrio splendidus 12B01], ...	153.0	[0..3]	[182..45]
gi\|90437787, gi\|... - gi\|90581091\|ref\|ZP_01236891.1\| putative Type II secretory pathway, component EpsJ [Vibrio angustum S...	151.0	[0..3]	[189..7]
gi\|91224975, gi\|... - gi\|91224975\|ref\|ZP_01260234.1\| general secretion pathway protein J [Vibrio alginolyticus 12G01], gi\|...	151.0	[0..2]	[193..12]
gi\|89049781, gi\|... - gi\|89074493\|ref\|ZP_01160970.1\| putative Type II secretory pathway, component EpsJ [Photobacterium sp...	150.0	[0..3]	[183..7]

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Predicted Domain #1

Region A:
Residues: [1-81]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINRQQGFTL LEVMAALAIF SMLSVLAFMI FSQASELHQR SQKEIQQFNQ LQRTITILDN  60
   61 DLLQLVARRN RSTDKIMVLG E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10.39794
Match:	1ay2A
Description:	STRUCTURE OF THE FIBER-FORMING PROTEIN PILIN AT 2.6 ANGSTROMS RESOLUTION
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [82-195]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EAIFTTQSRD PLAPLSEAQT LLTVHWYLRN HTLYRAVRTS VDGRKDQPAQ AMLEHVESFL  60
   61 LESNSGESQE LPLSVTLHLQ TQQYGGLQRR FALPEQLARE ESPAQTQAGN NNHE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits