YRC Public Data Repository - Protein Structure Prediction

Protein:	GSPH_ECOLI
Organism:	Escherichia coli
Length:	169 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GSPH_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|169753363, gi... - gi\|170018435\|ref\|YP_001723389.1\| general secretion pathway protein H [Escherichia coli ATCC 8739], g... gi\|124498214, gi... - gi\|124532028\|ref\|ZP_01702063.1\| general secretion pathway protein H [Escherichia coli B], gi\|1244982... gi\|188488416, gi... - gi\|75511234\|ref\|ZP_00733936.1\| COG2165: Type II secretory pathway, pseudopilin PulG [Escherichia col... gi\|157162803, gi... - gi\|75197262\|ref\|ZP_00707332.1\| COG2165: Type II secretory pathway, pseudopilin PulG [Escherichia col...	128.0	[0..1]	[169..1]
gi\|191171618, gi... - gi\|75241578\|ref\|ZP_00725423.1\| COG2165: Type II secretory pathway, pseudopilin PulG [Escherichia col... gi\|110345160, gi... - gi\|110643568\|ref\|YP_671298.1\| putative general secretion pathway protein H precursor [Escherichia co...	128.0	[0..1]	[169..1]
gi\|218560390, gi... - gi\|218560390\|ref\|YP_002393303.1\| putative general secretory pathway component, cryptic [Escherichia ... gi\|91074340, gi\|... - gi\|91212766\|ref\|YP_542752.1\| putative general secretion pathway protein H precursor [Escherichia col... gi\|237703059, gi... - gi\|237703059\|ref\|ZP_04533540.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|117625607, gi... - gi\|117625607\|ref\|YP_858930.1\| putative general secretion pathway protein H precursor [Escherichia co...	127.0	[0..1]	[169..1]
gi\|227839604, gi... - gi\|227883460\|ref\|ZP_04001265.1\| general secretion pathway protein H precursor [Escherichia coli 8397... gi\|26110352, gi\|... - gi\|26249924\|ref\|NP_755964.1\| putative general secretion pathway protein H precursor [Escherichia col...	125.0	[0..1]	[169..1]
gi\|194439972, gi... - gi\|83584681\|ref\|ZP_00923347.1\| COG2165: Type II secretory pathway, pseudopilin PulG [Escherichia col... gi\|254290007, gi... - gi\|254290007\|ref\|YP_003055755.1\| predicted general secretory pathway component, cryptic [Escherichia... gi\|251786583, gi... - gi\|251786583\|ref\|YP_003000887.1\| hypothetical protein B21_03131 [Escherichia coli BL21], gi\|24237885... gi\|253975158, gi... - gi\|254163257\|ref\|YP_003046365.1\| predicted general secretory pathway component, cryptic [Escherichia...	125.0	[0..1]	[169..1]
gi\|121630900, gi... - gi\|121726739\|ref\|ZP_01679964.1\| general secretion pathway protein G [Vibrio cholerae V52], gi\|121630... gi\|153212560, gi... - gi\|153212560\|ref\|ZP_01948307.1\| general secretion pathway protein G [Vibrio cholerae 1587], gi\|12411... gi\|153221040, gi... - gi\|153221040\|ref\|ZP_01952095.1\| general secretion pathway protein G [Vibrio cholerae MAK 757], gi\|12... gi\|153817426, gi... - gi\|153817426\|ref\|ZP_01970093.1\| general secretion pathway protein G [Vibrio cholerae NCTC 8457], gi\|... gi\|229353331, gi... - gi\|229509857\|ref\|ZP_04399338.1\| general secretion pathway protein G [Vibrio cholerae B33], gi\|229353... GSPG_VIBCH - General secretion pathway protein G OS=Vibrio cholerae GN=epsG PE=1 SV=1 gi\|150424107, gi... - gi\|254285925\|ref\|ZP_04960887.1\| general secretion pathway protein G [Vibrio cholerae AM-19226], gi\|1... gi\|148876148, gi... - gi\|153828318\|ref\|ZP_01980985.1\| general secretion pathway protein G [Vibrio cholerae 623-39], gi\|148... gi\|153825533, gi... - gi\|153825533\|ref\|ZP_01978200.1\| general secretion pathway protein G [Vibrio cholerae MZO-2], gi\|1497... gi\|227082844, gi... - gi\|227082844\|ref\|YP_002811395.1\| general secretion pathway protein G [Vibrio cholerae M66-2], gi\|227... gi\|229507222, gi... - gi\|229507222\|ref\|ZP_04396727.1\| general secretion pathway protein G [Vibrio cholerae BX 330286], gi\|... gi\|229513658, gi... - gi\|229513658\|ref\|ZP_04403122.1\| general secretion pathway protein G [Vibrio cholerae TMA 21], gi\|229... gi\|229346041, gi... - gi\|229516978\|ref\|ZP_04406424.1\| general secretion pathway protein G [Vibrio cholerae RC9], gi\|229346... gi\|75830655, gi\|... - gi\|75830655\|ref\|ZP_00759929.1\| COG2165: Type II secretory pathway, pseudopilin PulG [Vibrio cholerae... gi\|229334976, gi... - gi\|229527344\|ref\|ZP_04416736.1\| general secretion pathway protein G [Vibrio cholerae 12129(1)], gi\|2... gi\|146316398, gi... - gi\|75827973\|ref\|ZP_00757408.1\| COG2165: Type II secretory pathway, pseudopilin PulG [Vibrio cholerae... gi\|229369383, gi... - gi\|229606728\|ref\|YP_002877376.1\| general secretion pathway protein G [Vibrio cholerae MJ-1236], gi\|2... gi\|75824763 - gi\|75824763\|ref\|ZP_00754209.1\| COG2165: Type II secretory pathway, pseudopilin PulG [Vibrio cholerae... gi\|75820630 - gi\|75820630\|ref\|ZP_00750673.1\| COG2165: Type II secretory pathway, pseudopilin PulG [Vibrio cholerae... GSPG_VIBCH - Type II secretion system protein G OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba ... gi\|121586636, gi... - gi\|121586636\|ref\|ZP_01676421.1\| general secretion pathway protein G [Vibrio cholerae 2740-80], gi\|12...	120.0	[0..1]	[160..4]
gi\|90581088, gi\|... - gi\|90581088\|ref\|ZP_01236888.1\| putative type II secretory pathway, pseudopilin EpsG [Vibrio angustum... gi\|89049778, gi\|... - gi\|89074490\|ref\|ZP_01160967.1\| putative type II secretory pathway, pseudopilin EpsG [Photobacterium ...	119.0	[0..2]	[159..3]
gi\|116221301 - gi\|116221301\|ref\|ZP_01486711.1\| hypothetical protein VchoV5_02000650 [Vibrio cholerae V51] gi\|116217921 - gi\|116217921\|ref\|ZP_01483707.1\| hypothetical protein VchoR_02000325 [Vibrio cholerae RC385] gi\|75815849 - gi\|75815849\|ref\|ZP_00746339.1\| COG2165: Type II secretory pathway, pseudopilin PulG [Vibrio cholerae...	118.0	[0..1]	[160..1]
gi\|54310531, gi\|... - gi\|54310531\|ref\|YP_131551.1\| putative type II secretory pathway, pseudopilin EpsG [Photobacterium pr...	117.0	[0..2]	[159..14]
gi\|48781360, gi\|... - gi\|91785781\|ref\|YP_560987.1\| general secretion pathway protein G [Burkholderia xenovorans LB400], gi...	117.0	[0..2]	[158..17]

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Predicted Domain #1

Region A:
Residues: [1-169]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQQRGFTLL EMMLVLALVA ITASVVLFTY GREDVASTRA RETAARFTAA LELAIDRATL  60
   61 SGQPVGIHFS DSAWRIMVPG KTPSAWRWVP LQEDAADESQ NDWDEELSIH LQPFKPDDSN 120
  121 QPQVVILADG QITPFSLLMA NAGTGEPLLT LVCSGSWPLD QTLARDTRP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.69897
Match:	1oqwA
Description:	Pilin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits