YRC Public Data Repository - Protein Structure Prediction

Protein:	GRK1_ECOLI, GLXK...
Organism:	Escherichia coli
Length:	381 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GRK1_ECOLI, GLXK....

Description	E-value	Query Range	Subject Range
gi\|89050078, gi\|... - gi\|89074142\|ref\|ZP_01160641.1\| putative glycerate kinase [Photobacterium sp. SKA34], gi\|89050078\|gb\|...	541.0	[0..1]	[377..1]
gi\|90310741, gi\|... - gi\|90408129\|ref\|ZP_01216298.1\| putative glycerate kinase [Psychromonas sp. CNPT3], gi\|90310741\|gb\|EA...	541.0	[0..1]	[375..1]
gi\|56422000, gi\|... - gi\|56422000\|ref\|YP_149318.1\| glycerate kinase [Geobacillus kaustophilus HTA426], gi\|56381842\|dbj\|BAD...	540.0	[0..1]	[377..1]
gi\|54310278, gi\|... - gi\|54310278\|ref\|YP_131298.1\| putative glycerate kinase [Photobacterium profundum SS9], gi\|46914719\|e...	539.0	[0..1]	[378..1]
gi\|59712764, gi\|... - gi\|59712764\|ref\|YP_205540.1\| glycerate kinase [Vibrio fischeri ES114], gi\|59480865\|gb\|AAW86652.1\| gl...	537.0	[0..1]	[375..1]
Q664E8\|Q664E8_YERPS - Putative glycerate kinase - Yersinia pseudotuberculosis gi\|51598111, gi\|... - gi\|51598111\|ref\|YP_072302.1\| putative glycerate kinase [Yersinia pseudotuberculosis IP 32953], gi\|51...	537.0	[0..1]	[378..1]
gi\|90412003, gi\|... - gi\|90412003\|ref\|ZP_01220010.1\| putative glycerate kinase [Photobacterium profundum 3TCK], gi\|9032698...	537.0	[0..1]	[378..1]
gi\|165927023, gi... - gi\|165927023\|ref\|ZP_02222855.1\| glycerate kinase [Yersinia pestis biovar Orientalis str. F1991016], ... gi\|166205415, gi... - gi\|166213474\|ref\|ZP_02239509.1\| glycerate kinase [Yersinia pestis biovar Antiqua str. B42003004], gi... gi\|166009509, gi... - gi\|166009509\|ref\|ZP_02230407.1\| glycerate kinase [Yersinia pestis biovar Antiqua str. E1979001], gi\|... gi\|167421110, gi... - gi\|167421110\|ref\|ZP_02312863.1\| glycerate kinase [Yersinia pestis biovar Orientalis str. MG05-1020],... gi\|167400656, gi... - gi\|167400656\|ref\|ZP_02306165.1\| glycerate kinase [Yersinia pestis biovar Antiqua str. UG05-0454], gi... gi\|21960842, gi\|... - gi\|22127720\|ref\|NP_671143.1\| hypothetical protein y3849 [Yersinia pestis KIM], gi\|21960842\|gb\|AAM873... gi\|25321039 - pir\|\|AE0484 probable glycerate kinase (EC 2.7.1.31) [imported] - Yersinia pestis (strain CO92) gi\|115349586, gi... - gi\|218930975\|ref\|YP_002348850.1\| putative glycerate kinase [Yersinia pestis CO92], gi\|16124107\|ref\|N... gi\|45443092, gi\|... - gi\|45443092\|ref\|NP_994631.1\| putative glycerate kinase [Yersinia pestis biovar Microtus str. 91001],... gi\|229836439, gi... - gi\|229836439\|ref\|ZP_04456606.1\| putative glycerate kinase [Yersinia pestis Pestoides A], gi\|22970650... gi\|229696047, gi... - gi\|229839681\|ref\|ZP_04459840.1\| putative glycerate kinase [Yersinia pestis biovar Orientalis str. PE... gi\|229691103, gi... - gi\|229841764\|ref\|ZP_04461920.1\| putative glycerate kinase [Yersinia pestis biovar Orientalis str. In... gi\|89105107, gi\|... - gi\|89105107\|ref\|ZP_01177633.1\| COG1929: Glycerate kinase [Yersinia pestis biovar Orientalis str. IP2... gi\|108809799, gi... - gi\|108809799\|ref\|YP_653715.1\| putative glycerate kinase [Yersinia pestis Antiqua], gi\|108781712\|gb\|A... gi\|229904302, gi... - gi\|229904302\|ref\|ZP_04519413.1\| putative glycerate kinase [Yersinia pestis Nepal516], gi\|229678420\|g... gi\|150261064, gi... - gi\|150261064\|ref\|ZP_01917792.1\| putative glycerate kinase [Yersinia pestis CA88-4125], gi\|149290472\|... gi\|162420603, gi... - gi\|77635485\|ref\|ZP_00797569.1\| COG1929: Glycerate kinase [Yersinia pestis Angola], gi\|162420603\|ref\|... gi\|145212294, gi... - gi\|145600598\|ref\|YP_001164674.1\| glycerate kinase [Yersinia pestis Pestoides F], gi\|145212294\|gb\|ABP... gi\|167467314 - gi\|167467314\|ref\|ZP_02332018.1\| glycerate kinase [Yersinia pestis FV-1] gi\|167426624, gi... - gi\|167426624\|ref\|ZP_02318377.1\| glycerate kinase [Yersinia pestis biovar Mediaevalis str. K1973002],...	537.0	[0..1]	[378..1]
gi\|153949377, gi... - gi\|77631053\|ref\|ZP_00793639.1\| COG1929: Glycerate kinase [Yersinia pseudotuberculosis IP 31758], gi\|...	536.0	[0..1]	[378..1]
gi\|90580252, gi\|... - gi\|90580252\|ref\|ZP_01236059.1\| putative glycerate kinase [Vibrio angustum S14], gi\|90438554\|gb\|EAS63...	536.0	[0..1]	[377..1]

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Predicted Domain #1

Region A:
Residues: [1-381]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIVIAPDSF KESLSAEKCC QAIKAGFSTL FPDANYICLP IADGGEGTVD AMVAATGGNI  60
   61 VTLEVCGPMG EKVNAFYGLT GDGKTAVIEM AAASGLMLVA PEKRNPLLAS SFGTGELIRH 120
  121 ALDNDIRHII LGIGGSATVD GGMGMAQALG VRFLDADGQA LAANGGNLAR VASIEMDECD 180
  181 PRLANCHIEV ACDVDNPLVG ARGAAAVFGP QKGATPEMVE ELEQGLQNYA RVLQQQTEIN 240
  241 VCQMAGGGAA GGMGIAAAVF LNADIKPGIE IVLNAVNLAQ AVQGAALVIT GEGRIDSQTA 300
  301 GGKAPLGVAS VAKQFNVPVI GIAGVLGDGV EVVHQYGIDA VFSILPRLAP LAEVLASGET 360
  361 NLFNSARNIA CAIKIGQGIK N

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	105.0
Match:	1to6A
Description:	Glycerate kinase from Neisseria meningitidis (serogroup A)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.79401350677351	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: