YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|149740327
Organism:	Equus caballus
Length:	96 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|149740327.

Description	E-value	Query Range	Subject Range
gi\|84202411, gi\|... - gi\|84202411\|gb\|AAI11653.1\| Sec61 beta subunit [Bos taurus], gi\|115497008\|ref\|NP_001068760.1\| Sec61 b...	1.0E-30	[1..96]	[1..96]
gi\|109476493, gi... - gi\|27714473\|ref\|XP_216400.1\| PREDICTED: similar to Protein transport protein Sec61 beta subunit [Rat...	2.0E-30	[1..96]	[1..96]
gi\|109131069 - gi\|109131069\|ref\|XP_001102187.1\| PREDICTED: Sec61 beta subunit [Macaca mulatta]	3.0E-30	[1..96]	[1..96]
SC61B_MOUSE - Protein transport protein Sec61 subunit beta OS=Mus musculus GN=Sec61b PE=1 SV=3 gi\|51980602 - gb\|AAH82171.1\| Unknown (protein for MGC:98571) [Xenopus laevis]	3.0E-30	[1..96]	[1..96]
gi\|62898329 - gi\|62898329\|dbj\|BAD97104.1\| protein translocation complex beta variant [Homo sapiens]	4.0E-30	[1..96]	[1..96]
gi\|50736212 - gi\|50736212\|ref\|XP_419082.1\| PREDICTED: similar to Protein transport protein SEC61 beta subunit [Gal...	5.0E-30	[1..96]	[1..96]
gi\|18000273 - gi\|18000273\|gb\|AAL54898.1\|AF159543_1 transport protein Sec61 beta subunit [Lapemis hardwickii]	7.0E-30	[1..96]	[1..96]
gi\|77748125, gi\|... - gi\|77748125\|gb\|AAI06322.1\| Sec61b protein [Xenopus laevis], gi\|27370895\|gb\|AAH41270.1\| Sec61b protei...	1.0E-28	[1..96]	[1..96]
gi\|47225454 - gi\|47225454\|emb\|CAG11937.1\| unnamed protein product [Tetraodon nigroviridis]	1.0E-26	[2..96]	[4..99]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGPTPSGTN VGSSGRSPSK AVAARAAGST VRQRKNASCG TRSAGRTTSA GTGGMWRFYT  60
   61 EDSPGLKVGP VPVLVMSLLF IASVFMLHIW GKYTRS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits