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View Structure Prediction Details

Protein: GPDA_LEPIC
Organism: Leptospira interrogans serovar Copenhageni
Length: 335 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GPDA_LEPIC.

Description E-value Query
Range
Subject
Range
GPDA_LEPIN - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira interrogans serogroup Icterohaemorrhagiae...
GPDA_LEPIN - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira interrogans GN=gpsA PE=3 SV=1
283.0 [0..1] [335..1]

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Predicted Domain #1
Region A:
Residues: [1-335]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIGVIGSGS FGTALGSLLA DKGYEVTLWC RNDSQVESIN RNHINNKHLP NFTLPEKLTA  60
   61 SKDLRNVVQG KDMIVSSPPS HALSEVLREI KEYLPEKVPI VSASKGIENG TLRLVSEIFE 120
  121 SELPEKYHSY LSYLSGPSFA KEIIQKVPTI VSIASKNETT ARKVQEIFSF LYFRTYWTPD 180
  181 VIGVEVGGSL KNVIALAAGV SDGLGFGQNT RAALITRGLN EITKIGLKLG ADPMTFLGPS 240
  241 GMGDLILTCC GEQSRNRTVG FRLGKGETLE QILSSMNEVA EGVKTTQSAY ELSQKLGIEM 300
  301 AITNEVYKML YEGKNPREVV KDLMKRDLKR EGVSV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 55.30103
Match: 1z82A
Description: Crystal structure of glycerol-3-phosphate dehydrogenase (TM0378) from THERMOTOGA MARITIMA at 2.00 A resolution
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle