YRC Public Data Repository - Protein Structure Prediction

Protein:	GPDA_ECOLI
Organism:	Escherichia coli
Length:	339 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GPDA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|238715079, gi... - gi\|77958478\|ref\|ZP_00822511.1\| COG0240: Glycerol-3-phosphate dehydrogenase [Yersinia bercovieri ATCC...	281.0	[0..1]	[335..1]
gi\|167468385 - gi\|167468385\|ref\|ZP_02333089.1\| glycerol-3-phosphate dehydrogenase (NAD(P)+) [Yersinia pestis FV-1] gi\|167054371, gi... - gi\|167426682\|ref\|ZP_02318435.1\| glycerol-3-phosphate dehydrogenase [NAD(P)+] [Yersinia pestis biovar... GPDA_YERPB - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Yersinia pseudotuberculosis serotype IB (strain PB1/... GPDA_YERPY - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Yersinia pseudotuberculosis serotype O:3 (strain YPI... gi\|165922034, gi... - gi\|165926174\|ref\|ZP_02222006.1\| glycerol-3-phosphate dehydrogenase [NAD(P)+] [Yersinia pestis biovar... gi\|166213685, gi... - gi\|166213685\|ref\|ZP_02239720.1\| glycerol-3-phosphate dehydrogenase [NAD(P)+] [Yersinia pestis biovar... gi\|165989636, gi... - gi\|166011490\|ref\|ZP_02232388.1\| glycerol-3-phosphate dehydrogenase [NAD(P)+] [Yersinia pestis biovar... gi\|167418927, gi... - gi\|167418927\|ref\|ZP_02310680.1\| glycerol-3-phosphate dehydrogenase [NAD(P)+] [Yersinia pestis biovar... gi\|167051015, gi... - gi\|167398511\|ref\|ZP_02304035.1\| glycerol-3-phosphate dehydrogenase [NAD(P)+] [Yersinia pestis biovar... gi\|165936241, gi... - gi\|89103918\|ref\|ZP_01176478.1\| COG0240: Glycerol-3-phosphate dehydrogenase [Yersinia pestis biovar O... GPDA_YERPA - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=gpsA... GPDA_YERPN - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=gps... gi\|16120419, gi\|... - gi\|218927287\|ref\|YP_002345162.1\| NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [Yersinia pest... gi\|229836181, gi... - gi\|229836181\|ref\|ZP_04456349.1\| glycerol-3-phosphate dehydrogenase (NAD+) [Yersinia pestis Pestoides... gi\|229839917, gi... - gi\|229839917\|ref\|ZP_04460076.1\| glycerol-3-phosphate dehydrogenase (NAD+) [Yersinia pestis biovar Or... gi\|229690309, gi... - gi\|229841999\|ref\|ZP_04462154.1\| glycerol-3-phosphate dehydrogenase (NAD+) [Yersinia pestis biovar Or... gi\|150260870, gi... - gi\|150260870\|ref\|ZP_01917598.1\| glycerol-3-phosphate dehydrogenase [Yersinia pestis CA88-4125], gi\|1... GPDA_YERPP - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Yersinia pestis (strain Pestoides F) GN=gpsA PE=3 SV... GPDA_YERPS - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Yersinia pseudotuberculosis GN=gpsA PE=3 SV=1 GPDA_YERPG - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Yersinia pestis bv. Antiqua (strain Angola) GN=gpsA ... GPDA_YERP3 - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Yersinia pseudotuberculosis serotype O:1b (strain IP... gi\|21956735, gi\|... - gi\|22123994\|ref\|NP_667417.1\| NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [Yersinia pestis K... GPDA_YERPE - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Yersinia pestis GN=gpsA PE=3 SV=1 GPDA_YERPS - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Yersinia pseudotuberculosis serotype I (strain IP329... gi\|45439932, gi\|... - gi\|45439932\|ref\|NP_991471.1\| NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [Yersinia pestis b...	280.0	[0..1]	[335..1]
gi\|191170430, gi... - gi\|75242606\|ref\|ZP_00726350.1\| COG0240: Glycerol-3-phosphate dehydrogenase [Escherichia coli F11], g...	280.0	[0..1]	[339..1]
GPDA_SHIF8 - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Shigella flexneri serotype 5b (strain 8401) GN=gpsA ...	280.0	[0..1]	[339..1]
GPDA_SHIB3 - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS... GPDA_SHIBS - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Shigella boydii serotype 4 (strain Sb227) GN=gpsA PE...	280.0	[0..1]	[339..1]
gi\|77972955, gi\|... - gi\|77972955\|ref\|ZP_00828509.1\| COG0240: Glycerol-3-phosphate dehydrogenase [Yersinia frederiksenii A...	278.0	[0..1]	[335..1]
gi\|238794391, gi... - gi\|77977373\|ref\|ZP_00832823.1\| COG0240: Glycerol-3-phosphate dehydrogenase [Yersinia intermedia ATCC...	277.0	[0..1]	[335..1]
gi\|238717337, gi... - gi\|77961958\|ref\|ZP_00825785.1\| COG0240: Glycerol-3-phosphate dehydrogenase [Yersinia mollaretii ATCC...	277.0	[0..1]	[335..1]
GPDA_LEPIC - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira interrogans serogroup Icterohaemorrhagiae... GPDA_LEPIC - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira interrogans serogroup Icterohaemorrhagiae...	277.0	[0..6]	[335..1]
GPDA_LEPIN - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira interrogans serogroup Icterohaemorrhagiae... GPDA_LEPIN - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Leptospira interrogans GN=gpsA PE=3 SV=1	276.0	[0..6]	[335..1]

Back

Predicted Domain #1

Region A:
Residues: [1-339]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQRNASMTV IGAGSYGTAL AITLARNGHE VVLWGHDPEH IATLERDRCN AAFLPDVPFP  60
   61 DTLHLESDLA TALAASRNIL VVVPSHVFGE VLRQIKPLMR PDARLVWATK GLEAETGRLL 120
  121 QDVAREALGD QIPLAVISGP TFAKELAAGL PTAISLASTD QTFADDLQQL LHCGKSFRVY 180
  181 SNPDFIGVQL GGAVKNVIAI GAGMSDGIGF GANARTALIT RGLAEMSRLG AALGADPATF 240
  241 MGMAGLGDLV LTCTDNQSRN RRFGMMLGQG MDVQSAQEKI GQVVEGYRNT KEVRELAHRF 300
  301 GVEMPITEEI YQVLYCGKNA REAALTLLGR ARKDERSSH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.39794
Match:	1z82A
Description:	Crystal structure of glycerol-3-phosphate dehydrogenase (TM0378) from THERMOTOGA MARITIMA at 2.00 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits