YRC Public Data Repository - Protein Structure Prediction

Protein:	GNTU_ECOLI
Organism:	Escherichia coli
Length:	446 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GNTU_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|83363652, gi\|... - gi\|83375123\|ref\|ZP_00919887.1\| TRAP dicarboxylate transporter, DctM subunit [Rhodobacter sphaeroides...	209.0	[0..8]	[446..375]
gi\|25504467 - pir\|\|A95272 hypothetical protein SMa0151 [imported] - Sinorhizobium meliloti (strain 1021) magaplasm... gi\|16262534, gi\|... - gi\|16262534\|ref\|NP_435327.1\| hypothetical protein SMa0151 [Sinorhizobium meliloti 1021], gi\|14523143...	186.0	[0..57]	[441..1]
gi\|194554935, gi... - gi\|84323909\|ref\|ZP_00971975.1\| COG1593: TRAP-type C4-dicarboxylate transport system, large permease ... gi\|115588537, gi... - gi\|32044546\|ref\|ZP_00141647.1\| COG1593: TRAP-type C4-dicarboxylate transport system, large permease ...	164.0	[0..9]	[446..1]
gi\|11351131 - pir\|\|B83001 probable C4-dicarboxylate transporter PA5169 [imported] - Pseudomonas aeruginosa (strain... DCTM_PSEAE - C4-dicarboxylate TRAP transporter large permease protein DctM OS=Pseudomonas aeruginosa (strain ATCC... gi\|126170062, gi... - gi\|84317807\|ref\|ZP_00966243.1\| COG1593: TRAP-type C4-dicarboxylate transport system, large permease ... gi\|218894269, gi... - gi\|218894269\|ref\|YP_002443139.1\| putative C4-dicarboxylate transporter [Pseudomonas aeruginosa LESB5... gi\|107104270 - gi\|107104270\|ref\|ZP_01368188.1\| hypothetical protein PaerPA_01005344 [Pseudomonas aeruginosa PACS2]	164.0	[0..9]	[446..1]
gi\|84387730, gi\|... - gi\|84387730\|ref\|ZP_00990746.1\| C4-dicarboxylate transport protein [Vibrio splendidus 12B01], gi\|8437... gi\|218323197, gi... - gi\|218710178\|ref\|YP_002417799.1\| DctQ, TRAP-type C4-dicarboxylate transport system, large permease c...	164.0	[0..9]	[444..1]
gi\|183179523, gi... - gi\|183179523\|ref\|ZP_02957734.1\| C4-dicarboxylate transport protein [Vibrio cholerae MZO-3], gi\|18301... gi\|254286861, gi... - gi\|254286861\|ref\|ZP_04961813.1\| C4-dicarboxylate transport protein [Vibrio cholerae AM-19226], gi\|19... gi\|153829247, gi... - gi\|153829247\|ref\|ZP_01981914.1\| C4-dicarboxylate transport protein [Vibrio cholerae 623-39], gi\|1488... gi\|227082057, gi... - gi\|227082057\|ref\|YP_002810608.1\| putative C4-dicarboxylate transport protein [Vibrio cholerae M66-2]... DCTM_VIBCH - C4-dicarboxylate TRAP transporter large permease protein DctM OS=Vibrio cholerae serotype O1 (strain... gi\|229507978, gi... - gi\|229507978\|ref\|ZP_04397483.1\| TRAP-type C4-dicarboxylate transport system large permease component... gi\|11279707 - pir\|\|D82140 C4-dicarboxylate transport protein VC1927 [imported] - Vibrio cholerae (strain N16961 se... gi\|229515312, gi... - gi\|229515312\|ref\|ZP_04404772.1\| TRAP-type C4-dicarboxylate transport system large permease component... gi\|229343611, gi... - gi\|229518922\|ref\|ZP_04408365.1\| TRAP-type C4-dicarboxylate transport system large permease component... gi\|229529048, gi... - gi\|229529048\|ref\|ZP_04418438.1\| TRAP-type C4-dicarboxylate transport system large permease component... gi\|75830742, gi\|... - gi\|75830742\|ref\|ZP_00760014.1\| COG1593: TRAP-type C4-dicarboxylate transport system, large permease ... gi\|229607524, gi... - gi\|229607524\|ref\|YP_002878172.1\| TRAP-type C4-dicarboxylate transport system large permease componen... gi\|146316670, gi... - gi\|75827248\|ref\|ZP_00756683.1\| COG1593: TRAP-type C4-dicarboxylate transport system, large permease ... gi\|121547941, gi... - gi\|121587840\|ref\|ZP_01677598.1\| C4-dicarboxylate transport protein [Vibrio cholerae 2740-80], gi\|121... gi\|254226477, gi... - gi\|75819053\|ref\|ZP_00749154.1\| COG1593: TRAP-type C4-dicarboxylate transport system, large permease ... gi\|153217040, gi... - gi\|153217040\|ref\|ZP_01950804.1\| C4-dicarboxylate transport protein [Vibrio cholerae 1587], gi\|124113... gi\|229511785, gi... - gi\|229511785\|ref\|ZP_04401264.1\| TRAP-type C4-dicarboxylate transport system large permease component...	163.0	[0..9]	[444..1]
gi\|254229910, gi... - gi\|75854030\|ref\|ZP_00761754.1\| COG1593: TRAP-type C4-dicarboxylate transport system, large permease ...	163.0	[0..11]	[444..3]
gi\|86147630, gi\|... - gi\|86147630\|ref\|ZP_01065939.1\| C4-dicarboxylate transport protein [Vibrio sp. MED222], gi\|85834541\|g...	163.0	[0..9]	[444..1]
gi\|121629856, gi... - gi\|75814911\|ref\|ZP_00745452.1\| COG1593: TRAP-type C4-dicarboxylate transport system, large permease ...	163.0	[0..9]	[444..1]
gi\|91188384, gi\|... - gi\|91227737\|ref\|ZP_01261964.1\| C4-dicarboxylate transport protein [Vibrio alginolyticus 12G01], gi\|9...	163.0	[0..11]	[444..3]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTLTLVLTA VGSVLLLLFL VMKARMHAFL ALMVVSMGAG LFSGMPLDKI AATMEKGMGG  60
   61 TLGFLAVVVA LGAMFGKILH ETGAVDQIAV KMLKSFGHSR AHYAIGLAGL VCALPL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [117-252]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FFEVAIVLLI SVAFSMARHT GTNLVKLVIP LFAGVAAAAA FLVPGPAPML LASQMNADFG  60
   61 WMILIGLCAA IPGMIIAGPL WGNFISRYVE LHIPDDISEP HLGEGKMPSF GFSLSLILLP 120
  121 LVLVGLKTIA ARFVPE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [253-446]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSTAYEWFEF IGHPFTAILV ACLVAIYGLA MRQGMPKDKV MEICGHALQP AGIILLVIGA  60
   61 GGVFKQVLVD SGVGPALGEA LTGMGLPIAI TCFVLAAAVR IIQGSATVAC LTAVGLVMPV 120
  121 IEQLNYSGAQ MAALSICIAG GSIVVSHVND AGFWLFGKFT GATEAETLKT WTMMETILGT 180
  181 VGAIVGMIAF QLLS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits