YRC Public Data Repository - Protein Structure Prediction

Protein:	GNTT_ECOLI
Organism:	Escherichia coli
Length:	438 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GNTT_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|83363652, gi\|... - gi\|83375123\|ref\|ZP_00919887.1\| TRAP dicarboxylate transporter, DctM subunit [Rhodobacter sphaeroides...	205.0	[0..4]	[437..375]
gi\|25504467 - pir\|\|A95272 hypothetical protein SMa0151 [imported] - Sinorhizobium meliloti (strain 1021) magaplasm... gi\|16262534, gi\|... - gi\|16262534\|ref\|NP_435327.1\| hypothetical protein SMa0151 [Sinorhizobium meliloti 1021], gi\|14523143...	176.0	[0..53]	[434..1]
gi\|42548023, gi\|... - gi\|46116990\|ref\|XP_384513.1\| hypothetical protein FG04337.1 [Gibberella zeae PH-1], gi\|42548023\|gb\|E...	157.0	[0..7]	[400..517]
gi\|84387730, gi\|... - gi\|84387730\|ref\|ZP_00990746.1\| C4-dicarboxylate transport protein [Vibrio splendidus 12B01], gi\|8437... gi\|218323197, gi... - gi\|218710178\|ref\|YP_002417799.1\| DctQ, TRAP-type C4-dicarboxylate transport system, large permease c...	157.0	[0..5]	[436..1]
gi\|254229910, gi... - gi\|75854030\|ref\|ZP_00761754.1\| COG1593: TRAP-type C4-dicarboxylate transport system, large permease ...	156.0	[0..7]	[436..3]
gi\|26111606, gi\|... - gi\|26251174\|ref\|NP_757214.1\| Gnt-II system L-idonate transporter [Escherichia coli CFT073], gi\|26111... gi\|170684304, gi... - gi\|170684304\|ref\|YP_001746669.1\| Gnt-II system L-idonate transporter [Escherichia coli SMS-3-5], gi\|... gi\|117626609, gi... - gi\|117626609\|ref\|YP_859932.1\| L-idonate and D-gluconate transporter [Escherichia coli APEC O1], gi\|1... gi\|218702968, gi... - gi\|218702968\|ref\|YP_002410597.1\| L-idonate and D-gluconate transporter [Escherichia coli IAI39], gi\|... gi\|227886681, gi... - gi\|227886681\|ref\|ZP_04004486.1\| GntP family gluconate:proton (H+) symporter [Escherichia coli 83972]... gi\|91075395, gi\|... - gi\|91213821\|ref\|YP_543807.1\| IdnT L-idonate Gnt tranporter [Escherichia coli UTI89], gi\|91075395\|gb\|... gi\|237703941, gi... - gi\|237703941\|ref\|ZP_04534422.1\| gnt-II system L-idonate transporter [Escherichia sp. 3_2_53FAA], gi\|... gi\|110644624, gi... - gi\|110644624\|ref\|YP_672354.1\| Gnt-II system L-idonate transporter [Escherichia coli 536], gi\|1103462... gi\|75228078, gi\|... - gi\|75228078\|ref\|ZP_00714753.1\| COG2610: H+/gluconate symporter and related permeases [Escherichia co... gi\|74314744, gi\|... - gi\|74314744\|ref\|YP_313163.1\| L-idonate transporter [Shigella sonnei Ss046], gi\|73858221\|gb\|AAZ90928....	156.0	[0..1]	[438..1]
gi\|86147630, gi\|... - gi\|86147630\|ref\|ZP_01065939.1\| C4-dicarboxylate transport protein [Vibrio sp. MED222], gi\|85834541\|g...	156.0	[0..5]	[436..1]
gi\|11351131 - pir\|\|B83001 probable C4-dicarboxylate transporter PA5169 [imported] - Pseudomonas aeruginosa (strain... DCTM_PSEAE - C4-dicarboxylate TRAP transporter large permease protein DctM OS=Pseudomonas aeruginosa (strain ATCC... gi\|126170062, gi... - gi\|84317807\|ref\|ZP_00966243.1\| COG1593: TRAP-type C4-dicarboxylate transport system, large permease ... gi\|218894269, gi... - gi\|218894269\|ref\|YP_002443139.1\| putative C4-dicarboxylate transporter [Pseudomonas aeruginosa LESB5... gi\|107104270 - gi\|107104270\|ref\|ZP_01368188.1\| hypothetical protein PaerPA_01005344 [Pseudomonas aeruginosa PACS2]	156.0	[0..5]	[438..1]
gi\|194554935, gi... - gi\|84323909\|ref\|ZP_00971975.1\| COG1593: TRAP-type C4-dicarboxylate transport system, large permease ... gi\|115588537, gi... - gi\|32044546\|ref\|ZP_00141647.1\| COG1593: TRAP-type C4-dicarboxylate transport system, large permease ...	156.0	[0..5]	[436..1]
gi\|254164190, gi... - gi\|254164190\|ref\|YP_003047300.1\| L-idonate and D-gluconate transporter [Escherichia coli B str. REL6... gi\|253326156, gi... - gi\|254290940\|ref\|YP_003056690.1\| L-idonate and D-gluconate transporter [Escherichia coli BL21(DE3)],... gi\|242379784, gi... - gi\|251787511\|ref\|YP_003001815.1\| hypothetical protein B21_04095 [Escherichia coli BL21], gi\|24237978... gi\|31323184 - gi\|31323184\|gb\|AAP43528.1\| IdnT [Escherichia coli B]	156.0	[0..1]	[438..1]

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Predicted Domain #1

Region A:
Residues: [1-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLVIVAIGV ILLLLLMIRF KMNGFIALVL VALAVGLMQG MPLDKVIGSI KAGVGGTLGS  60
   61 LALIMGFGAM LGKMLADCGG AQRIATTLIA KFGKKHIQWA VVLTGFTVGF ALFYEVGFVL 120
  121 MLPLVFTIAA SA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [133-249]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NIPLLYVGVP MAAALSVTHG FLPPHPGPTA IATIFNADMG KTLLYGTILA IPTVILAGPV  60
   61 YARVLKGIDK PIPEGLYSAK TFSEEEMPSF GVSVWTSLVP VVLMAMRAIA EMILPKG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [250-438]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HAFLPVAEFL GDPVMATLIA VLIAMFTFGL NRGRSMDQIN DTLVSSIKII AMMLLIIGGG  60
   61 GAFKQVLVDS GVDKYIASMM HETNISPLLM AWSIAAVLRI ALGSATVAAI TAGGIAAPLI 120
  121 ATTGVSPELM VIAVGSGSVI FSHVNDPGFW LFKEYFNLTI GETIKSWSML ETIISVCGLV 180
  181 GCLLLNMVI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits