YRC Public Data Repository - Protein Structure Prediction

Protein:	GMHB_ECOLI
Organism:	Escherichia coli
Length:	191 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GMHB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|194421154, gi... - gi\|83584738\|ref\|ZP_00923402.1\| COG0241: Histidinol phosphatase and related phosphatases [Escherichia...	173.0	[0..1]	[191..1]
GMHBB_YERPE - D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase OS=Yersinia pestis GN=gmhB PE=3 SV=1 gi\|229704159, gi... - gi\|229837782\|ref\|ZP_04457942.1\| D,D-heptose 1,7-bisphosphate phosphatase [Yersinia pestis Pestoides ... gi\|229697370, gi... - gi\|229841004\|ref\|ZP_04461163.1\| D,D-heptose 1,7-bisphosphate phosphatase [Yersinia pestis biovar Ori... gi\|22126979, gi\|... - gi\|22126979\|ref\|NP_670402.1\| D,D-heptose 1,7-bisphosphate phosphatase [Yersinia pestis KIM], gi\|2196... gi\|117672769, gi... - gi\|77630006\|ref\|ZP_00792592.1\| COG0241: Histidinol phosphatase and related phosphatases [Yersinia ps... gi\|229689981, gi... - gi\|229843105\|ref\|ZP_04463255.1\| D,D-heptose 1,7-bisphosphate phosphatase [Yersinia pestis biovar Ori... gi\|186699418, gi... - gi\|186896392\|ref\|YP_001873504.1\| D,D-heptose 1,7-bisphosphate phosphatase [Yersinia pseudotuberculos... gi\|51590569, gi\|... - gi\|51597287\|ref\|YP_071478.1\| D,D-heptose 1,7-bisphosphate phosphatase [Yersinia pseudotuberculosis I... gi\|45437408, gi\|... - gi\|45442543\|ref\|NP_994082.1\| D,D-heptose 1,7-bisphosphate phosphatase [Yersinia pestis biovar Microt... gi\|15979142, gi\|... - gi\|218928243\|ref\|YP_002346118.1\| D,D-heptose 1,7-bisphosphate phosphatase [Yersinia pestis CO92], gi... gi\|108813085, gi... - gi\|229903528\|ref\|ZP_04518641.1\| D,D-heptose 1,7-bisphosphate phosphatase [Yersinia pestis Nepal516],... gi\|149290538, gi... - gi\|149366924\|ref\|ZP_01888957.1\| D,D-heptose 1,7-bisphosphate phosphatase [Yersinia pestis CA88-4125]... Q667M0\|Q667M0_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis gi\|145210615, gi... - gi\|145598919\|ref\|YP_001162995.1\| D,D-heptose 1,7-bisphosphate phosphatase [Yersinia pestis Pestoides... gi\|166211327, gi... - gi\|166211327\|ref\|ZP_02237362.1\| D,D-heptose 1,7-bisphosphate phosphatase [Yersinia pestis biovar Ant... gi\|165927100, gi... - gi\|165927100\|ref\|ZP_02222932.1\| D,D-heptose 1,7-bisphosphate phosphatase [Yersinia pestis biovar Ori... gi\|167419564, gi... - gi\|167419564\|ref\|ZP_02311317.1\| D,D-heptose 1,7-bisphosphate phosphatase [Yersinia pestis biovar Ori... gi\|167050646, gi... - gi\|167399938\|ref\|ZP_02305456.1\| D,D-heptose 1,7-bisphosphate phosphatase [Yersinia pestis biovar Ant... gi\|89105165 - gi\|89105165\|ref\|ZP_01177690.1\| COG0241: Histidinol phosphatase and related phosphatases [Yersinia pe... gi\|169749880, gi... - gi\|170023346\|ref\|YP_001719851.1\| D,D-heptose 1,7-bisphosphate phosphatase [Yersinia pseudotuberculos... gi\|162354068, gi... - gi\|77633969\|ref\|ZP_00796081.1\| COG0241: Histidinol phosphatase and related phosphatases [Yersinia pe... gi\|108778461, gi... - gi\|108806548\|ref\|YP_650464.1\| D,D-heptose 1,7-bisphosphate phosphatase [Yersinia pestis Antiqua], gi... gi\|167055789, gi... - gi\|167425389\|ref\|ZP_02317142.1\| D,D-heptose 1,7-bisphosphate phosphatase [Yersinia pestis biovar Med...	172.0	[0..1]	[186..1]
gi\|82775592, gi\|... - gi\|82775592\|ref\|YP_401939.1\| D,D-heptose 1,7-bisphosphate phosphatase [Shigella dysenteriae Sd197], ...	172.0	[0..1]	[190..1]
gi\|52306542, gi\|... - gi\|52424490\|ref\|YP_087627.1\| D,D-heptose 1,7-bisphosphate phosphatase [Mannheimia succiniciproducens...	171.0	[0..3]	[188..6]
GMHBB_PASMU - D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase OS=Pasteurella multocida (strain Pm70)... GMHB_PASMU - D,D-heptose 1,7-bisphosphate phosphatase OS=Pasteurella multocida GN=gmhB PE=3 SV=1	171.0	[0..5]	[187..2]
gi\|77963143, gi\|... - gi\|77963143\|ref\|ZP_00826955.1\| COG0241: Histidinol phosphatase and related phosphatases [Yersinia mo...	171.0	[0..1]	[188..1]
gi\|238724465, gi... - gi\|77972743\|ref\|ZP_00828302.1\| COG0241: Histidinol phosphatase and related phosphatases [Yersinia fr...	170.0	[0..1]	[186..1]
gi\|169756374, gi... - gi\|170021446\|ref\|YP_001726400.1\| D,D-heptose 1,7-bisphosphate phosphatase [Escherichia coli ATCC 873... gi\|218359549, gi... - gi\|218552781\|ref\|YP_002385694.1\| D,D-heptose 1,7-bisphosphate phosphatase [Escherichia coli IAI1], g... gi\|242376032, gi... - gi\|251783759\|ref\|YP_002998063.1\| hypothetical protein B21_00198 [Escherichia coli BL21], gi\|24237603... gi\|188495236, gi... - gi\|75512214\|ref\|ZP_00734786.1\| COG0241: Histidinol phosphatase and related phosphatases [Escherichia... gi\|218350398, gi... - gi\|218693666\|ref\|YP_002401333.1\| D,D-heptose 1,7-bisphosphate phosphatase [Escherichia coli 55989], ... gi\|192931204, gi... - gi\|75258806\|ref\|ZP_00730196.1\| COG0241: Histidinol phosphatase and related phosphatases [Escherichia... gi\|209917393, gi... - gi\|209917393\|ref\|YP_002291477.1\| D,D-heptose 1,7-bisphosphate phosphatase [Escherichia coli SE11], g... gi\|226840726, gi... - gi\|254037620\|ref\|ZP_04871697.1\| D,D-heptose 1,7-bisphosphate phosphatase [Escherichia sp. 1_1_43], g... gi\|157159667, gi... - gi\|75194412\|ref\|ZP_00704482.1\| COG0241: Histidinol phosphatase and related phosphatases [Escherichia... gi\|218355197, gi... - gi\|218547656\|ref\|YP_002381447.1\| D,D-heptose 1,7-bisphosphate phosphatase [Escherichia fergusonii AT... gi\|254287123, gi... - gi\|254287123\|ref\|YP_003052871.1\| hypothetical protein ECD_00199 [Escherichia coli BL21(DE3)], gi\|253... gi\|253972221, gi... - gi\|254160320\|ref\|YP_003043428.1\| hypothetical protein ECB_00199 [Escherichia coli B str. REL606], gi...	170.0	[0..1]	[190..1]
gi\|81244210, gi\|... - gi\|82542799\|ref\|YP_406746.1\| D,D-heptose 1,7-bisphosphate phosphatase [Shigella boydii Sb227], gi\|81...	170.0	[0..1]	[190..1]
gi\|91070845, gi\|... - gi\|91209271\|ref\|YP_539257.1\| D,D-heptose 1,7-bisphosphate phosphatase [Escherichia coli UTI89], gi\|9... gi\|215263434, gi... - gi\|215485362\|ref\|YP_002327793.1\| D,D-heptose 1,7-bisphosphate phosphatase [Escherichia coli O127:H6 ... gi\|110342013, gi... - gi\|110640421\|ref\|YP_668149.1\| D,D-heptose 1,7-bisphosphate phosphatase [Escherichia coli 536], gi\|11... gi\|218425640, gi... - gi\|218688076\|ref\|YP_002396288.1\| D,D-heptose 1,7-bisphosphate phosphatase [Escherichia coli ED1a], g... GMHB_ECOL6 - D,D-heptose 1,7-bisphosphate phosphatase OS=Escherichia coli O6 GN=gmhB PE=3 SV=1 gi\|218557142, gi... - gi\|218557142\|ref\|YP_002390055.1\| D,D-heptose 1,7-bisphosphate phosphatase [Escherichia coli S88], gi... gi\|115511609, gi... - gi\|117622485\|ref\|YP_851398.1\| D,D-heptose 1,7-bisphosphate phosphatase [Escherichia coli APEC O1], g... GMHBB_ECOL6 - D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase OS=Escherichia coli O6:H1 (strain CFT0... gi\|190908279, gi... - gi\|75241733\|ref\|ZP_00725570.1\| COG0241: Histidinol phosphatase and related phosphatases [Escherichia... gi\|227838134, gi... - gi\|227884885\|ref\|ZP_04002690.1\| D,D-heptose 1,7-bisphosphate phosphatase [Escherichia coli 83972], g... gi\|226902272, gi... - gi\|237704360\|ref\|ZP_04534841.1\| D,D-heptose 1,7-bisphosphate phosphatase [Escherichia sp. 3_2_53FAA]...	170.0	[0..1]	[190..1]

Back

Predicted Domain #1

Region A:
Residues: [1-191]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKSVPAIFL DRDGTINVDH GYVHEIDNFE FIDGVIDAMR ELKKMGFALV VVTNQSGIAR  60
   61 GKFTEAQFET LTEWMDWSLA DRDVDLDGIY YCPHHPQGSV EEFRQVCDCR KPHPGMLLSA 120
  121 RDYLHIDMAA SYMVGDKLED MQAAVAANVG TKVLVRTGKP ITPEAENAAD WVLNSLADLP 180
  181 QAIKKQQKPA Q

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.69897
Match:	2gmwA
Description:	No description for 2gmwA was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.92340854382984	bayes_pls_golite062009
imidazoleglycerol-phosphate dehydratase activity	0.35884565083558	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: