YRC Public Data Repository - Protein Structure Prediction

Protein:	GLXR_ECOLI
Organism:	Escherichia coli
Length:	292 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GLXR_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|84710963, gi\|... - gi\|84710963\|ref\|ZP_01019265.1\| putative oxidoreductase [Polaromonas naphthalenivorans CJ2], gi\|84696...	254.0	[0..2]	[284..61]
gi\|78691626, gi\|... - gi\|78691626\|ref\|ZP_00856232.1\| 2-hydroxy-3-oxopropionate reductase [Shewanella sp. MR-7], gi\|7850897...	253.0	[0..2]	[285..3]
gi\|113885410, gi... - gi\|82498193\|ref\|ZP_00883704.1\| 2-hydroxy-3-oxopropionate reductase [Shewanella sp. MR-4], gi\|8240382...	252.0	[0..2]	[285..3]
gi\|89336363, gi\|... - gi\|89896915\|ref\|YP_520402.1\| tartronate semialdehyde reductase [Desulfitobacterium hafniense Y51], g...	252.0	[0..1]	[291..1]
gi\|117920995, gi... - gi\|78688091\|ref\|ZP_00852814.1\| 2-hydroxy-3-oxopropionate reductase [Shewanella sp. ANA-3], gi\|785041...	251.0	[0..2]	[285..3]
gi\|160860401, gi... - gi\|160874879\|ref\|YP_001554195.1\| 6-phosphogluconate dehydrogenase NAD-binding [Shewanella baltica OS... gi\|151364864, gi... - gi\|153000246\|ref\|YP_001365927.1\| 6-phosphogluconate dehydrogenase NAD-binding [Shewanella baltica OS...	250.0	[0..2]	[287..3]
gi\|56179493, gi\|... - gi\|56460483\|ref\|YP_155764.1\| 2-hydroxy-3-oxopropionate reductase [Idiomarina loihiensis L2TR], gi\|56...	250.0	[0..4]	[285..6]
gi\|219667232, gi... - gi\|68207984\|ref\|ZP_00560124.1\| 2-hydroxy-3-oxopropionate reductase [Desulfitobacterium hafniense DCB...	250.0	[0..1]	[291..1]
gi\|120559332, gi... - gi\|82744320\|ref\|ZP_00906892.1\| 2-hydroxy-3-oxopropionate reductase [Shewanella sp. W3-18-1], gi\|8271... gi\|145564377, gi... - gi\|77816457\|ref\|ZP_00815643.1\| 6-phosphogluconate dehydrogenase, NAD-binding [Shewanella putrefacien...	249.0	[0..2]	[287..3]
gi\|24374309, gi\|... - gi\|24374309\|ref\|NP_718352.1\| 2-hydroxy-3-oxopropionate reductase [Shewanella oneidensis MR-1], gi\|24... SO2771 - 2-hydroxy-3-oxopropionate reductase	248.0	[0..2]	[285..3]

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Predicted Domain #1

Region A:
Residues: [1-292]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLGFIGLGI MGTPMAINLA RAGHQLHVTT IGPVADELLS LGAVSVETAR QVTEASDIIF  60
   61 IMVPDTPQVE EVLFGENGCT KASLKGKTIV DMSSISPIET KRFARQVNEL GGDYLDAPVS 120
  121 GGEIGAREGT LSIMVGGDEA VFERVKPLFE LLGKNITLVG GNGDGQTCKV ANQIIVALNI 180
  181 EAVSEALLFA SKAGADPVRV RQALMGGFAS SRILEVHGER MIKRTFNPGF KIALHQKDLN 240
  241 LALQSAKALA LNLPNTATCQ ELFNTCAANG GSQLDHSALV QALELMANHK LA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	63.0
Match:	1yb4A
Description:	Crystal Structure of the Tartronic Semialdehyde Reductase from Salmonella typhimurium LT2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits