YRC Public Data Repository - Protein Structure Prediction

Protein:	GLTI_ECOLI
Organism:	Escherichia coli
Length:	302 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GLTI_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|205347107, gi... - gi\|205347107\|gb\|EDZ33738.1\| glutamate/aspartate ABC transporter, periplasmic glutamate/aspartate-bin... gi\|168465842, gi... - gi\|195631794\|gb\|EDX50314.1\| glutamate/aspartate ABC transporter, periplasmic glutamate/aspartate-bin... gi\|168820210, gi... - gi\|205343265\|gb\|EDZ30029.1\| glutamate/aspartate ABC transporter, periplasmic glutamate/aspartate-bin... gi\|194402004, gi... - gi\|194443341\|ref\|YP_002039908.1\| glutamate/aspartate ABC transporter, periplasmic glutamate/aspartat... gi\|161364481, gi... - gi\|161615117\|ref\|YP_001589082.1\| glutamate and aspartate transporter subunit [Salmonella enterica su... gi\|167550797, gi... - gi\|205324274\|gb\|EDZ12113.1\| glutamate/aspartate ABC transporter, periplasmic glutamate/aspartate-bin... gi\|168231680, gi... - gi\|205334029\|gb\|EDZ20793.1\| glutamate/aspartate ABC transporter, periplasmic glutamate/aspartate-bin... GLTI_SALTY - Glutamate/aspartate import solute-binding protein OS=Salmonella typhimurium (strain LT2 / SGSC1412 /... GLTI_SALTY - Glutamate/aspartate periplasmic-binding protein OS=Salmonella typhimurium GN=gltI PE=3 SV=3 gi\|200389609, gi... - gi\|200389609\|ref\|ZP_03216220.1\| glutamate/aspartate ABC transporter, periplasmic glutamate/aspartate... gi\|238911616 - gi\|238911616\|ref\|ZP_04655453.1\| glutamate and aspartate transporter subunit [Salmonella enterica sub... GLTI_SALTY - Glutamate/aspartate periplasmic-binding protein OS=Salmonella typhimurium GN=gltI PE=3 SV=3 gi\|194469057, gi... - gi\|194469057\|ref\|ZP_03075041.1\| glutamate/aspartate ABC transporter, periplasmic glutamate/aspartate... gi\|197248012, gi... - gi\|197248012\|ref\|YP_002145641.1\| glutamate/aspartate ABC transporter, periplasmic glutamate/aspartat... gi\|197240638, gi... - gi\|197262383\|ref\|ZP_03162457.1\| glutamate/aspartate ABC transporter, periplasmic glutamate/aspartate... gi\|197936432, gi... - gi\|198241916\|ref\|YP_002214653.1\| glutamate/aspartate ABC transporter, periplasmic glutamate/aspartat...	265.0	[0..1]	[302..1]
gi\|224582500, gi... - gi\|224582500\|ref\|YP_002636298.1\| ABC transporter periplasmic binding protein [Salmonella enterica su... gi\|62126896, gi\|... - gi\|62179263\|ref\|YP_215680.1\| glutamate and aspartate transporter subunit [Salmonella enterica subsp....	265.0	[0..1]	[302..7]
gi\|16764042, gi\|... - gi\|16764042\|ref\|NP_459657.1\| glutamate and aspartate transporter subunit [Salmonella typhimurium LT2... gi\|197363130, gi... - gi\|197363130\|ref\|YP_002142767.1\| glutamate and aspartate transporter subunit [Salmonella enterica su... gi\|56414206, gi\|... - gi\|56414206\|ref\|YP_151281.1\| glutamate and aspartate transporter subunit [Salmonella enterica subsp....	265.0	[0..1]	[302..7]
gi\|16759617 - gi\|16759617\|ref\|NP_455234.1\| glutamate and aspartate transporter subunit [Salmonella enterica subsp.... gi\|25296373, gi\|... - gi\|25296373\|pir\|\|AF0583 ABC transporter periplasmic binding protein (glutamate/ aspartate) STY0710 [... gi\|29138241, gi\|... - gi\|29142610\|ref\|NP_805952.1\| glutamate and aspartate transporter subunit [Salmonella enterica subsp....	263.0	[0..1]	[302..7]
gi\|85058784, gi\|... - gi\|85058784\|ref\|YP_454486.1\| glutamate and aspartate transporter subunit [Sodalis glossinidius str. ...	258.0	[0..1]	[302..1]
gi\|84360756 - gi\|84360756\|ref\|ZP_00985448.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p...	255.0	[0..1]	[302..1]
gi\|83652241, gi\|... - gi\|83718416\|ref\|YP_441772.1\| glutamate/aspartate ABC transporter, periplasmic glutamate/aspartate-bi...	253.0	[0..1]	[302..2]
gi\|72607515, gi\|... - gi\|74019703\|ref\|ZP_00690316.1\| extracellular solute-binding protein, family 3 [Burkholderia ambifari...	253.0	[0..1]	[302..1]
gi\|56314062, gi\|... - gi\|56478019\|ref\|YP_159608.1\| putative ABC transporter, glutamate receptor [Aromatoleum aromaticum Eb...	253.0	[0..3]	[302..1]
gi\|53720532, gi\|... - gi\|53720532\|ref\|YP_109518.1\| glutamate/aspartate periplasmic binding protein precursor [Burkholderia...	252.0	[0..1]	[302..4]

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Predicted Domain #1

Region A:
Residues: [1-302]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLRKPATAI LALALSAGLA QADDAAPAAG STLDKIAKNG VIVVGHRESS VPFSYYDNQQ  60
   61 KVVGYSQDYS NAIVEAVKKK LNKPDLQVKL IPITSQNRIP LLQNGTFDFE CGSTTNNVER 120
  121 QKQAAFSDTI FVVGTRLLTK KGGDIKDFAN LKDKAVVVTS GTTSEVLLNK LNEEQKMNMR 180
  181 IISAKDHGDS FRTLESGRAV AFMMDDALLA GERAKAKKPD NWEIVGKPQS QEAYGCMLRK 240
  241 DDPQFKKLMD DTIAQVQTSG EAEKWFDKWF KNPIPPKNLN MNFELSDEMK ALFKEPNDKA 300
  301 LN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.69897
Match:	2ia4A
Description:	No description for 2ia4A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits