YRC Public Data Repository - Protein Structure Prediction

Protein:	GLTF_ECOLI
Organism:	Escherichia coli
Length:	254 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GLTF_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|217423228, gi... - gi\|217423228\|ref\|ZP_03454730.1\| conserved hypothetical protein [Burkholderia pseudomallei 576], gi\|2... gi\|254265116, gi... - gi\|254265116\|ref\|ZP_04955981.1\| conserved hypothetical protein [Burkholderia pseudomallei 1710a], gi... gi\|242311497, gi... - gi\|242311497\|ref\|ZP_04810514.1\| conserved hypothetical protein [Burkholderia pseudomallei 1106b], gi... gi\|126232052, gi... - gi\|126458284\|ref\|YP_001074210.1\| hypothetical protein BURPS1106A_A0167 [Burkholderia pseudomallei 11... gi\|76817479, gi\|... - gi\|76817479\|ref\|YP_336790.1\| hypothetical protein BURPS1710b_A1633 [Burkholderia pseudomallei 1710b]...	203.0	[0..6]	[253..2]
gi\|225929150, gi... - gi\|226198710\|ref\|ZP_03794274.1\| conserved hypothetical protein [Burkholderia pseudomallei Pakistan 9... gi\|167826605 - gi\|167826605\|ref\|ZP_02458076.1\| hypothetical protein Bpseu9_23220 [Burkholderia pseudomallei 9] gi\|53721159, gi\|... - gi\|53721159\|ref\|YP_110144.1\| hypothetical protein BPSS0123 [Burkholderia pseudomallei K96243], gi\|52...	199.0	[0..6]	[253..2]
gi\|169890587, gi... - gi\|170082752\|ref\|YP_001732072.1\| transcriptional regulator [Escherichia coli str. K-12 substr. DH10B... EG12812 - putative transcriptional regulator / Predicted secreted protein, function unknown; gltF paralog EG12812 - putative transcriptional regulator / Predicted secreted protein, function unknown; gltF paralog gi\|238902320, gi... - gi\|238902320\|ref\|YP_002928116.1\| putative transcriptional regulator [Escherichia coli BW2952], gi\|23... gi\|85676012, gi\|... - gi\|89109981\|ref\|AP_003761.1\| predicted transcriptional regulator [Escherichia coli str. K-12 substr.... YHCF_ECOLI - Hypothetical protein yhcF precursor - Escherichia coli	196.0	[0..9]	[254..4]
gi\|67099955, gi\|... - gi\|67666454\|ref\|ZP_00463701.1\| putative outer membrane protein [Burkholderia cenocepacia HI2424], gi...	189.0	[0..5]	[254..7]
gi\|84358649 - gi\|84358649\|ref\|ZP_00983421.1\| hypothetical protein BdolA_01004868 [Burkholderia dolosa AUO158]	186.0	[0..21]	[254..2]
gi\|67655785, gi\|... - gi\|67655785\|ref\|ZP_00453170.1\| putative outer membrane protein [Burkholderia cenocepacia AU 1054], g...	185.0	[0..5]	[254..7]
gi\|21957265, gi\|... - gi\|22124475\|ref\|NP_667898.1\| hypothetical protein y0561 [Yersinia pestis KIM], gi\|21957265\|gb\|AAM841... gi\|25509609 - pir\|\|AI0037 probable exported protein YPO0301 [imported] - Yersinia pestis (strain CO92) gi\|51594713, gi\|... - gi\|51594713\|ref\|YP_068904.1\| hypothetical protein YPTB0358 [Yersinia pseudotuberculosis IP 32953], g... gi\|45440312, gi\|... - gi\|45440312\|ref\|NP_991851.1\| hypothetical protein YP_0458 [Yersinia pestis biovar Microtus str. 9100... gi\|218927508, gi... - gi\|218927508\|ref\|YP_002345383.1\| hypothetical protein YPO0301 [Yersinia pestis CO92], gi\|16120640\|re... gi\|229842247, gi... - gi\|229842247\|ref\|ZP_04462402.1\| putative exported protein [Yersinia pestis biovar Orientalis str. In... gi\|229840166, gi... - gi\|229840166\|ref\|ZP_04460325.1\| putative exported protein [Yersinia pestis biovar Orientalis str. PE... gi\|229836558, gi... - gi\|229836558\|ref\|ZP_04456724.1\| putative exported protein [Yersinia pestis Pestoides A], gi\|22970624... gi\|150260651, gi... - gi\|150260651\|ref\|ZP_01917379.1\| putative exported protein [Yersinia pestis CA88-4125], gi\|149290059\|... gi\|145212612, gi... - gi\|145600916\|ref\|YP_001164992.1\| hypothetical protein YPDSF_3669 [Yersinia pestis Pestoides F], gi\|1... Q66FH8\|Q66FH8_YERPS - Putative exported protein precursor - Yersinia pseudotuberculosis gi\|165926764, gi... - gi\|165926764\|ref\|ZP_02222596.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|165990537, gi... - gi\|166010447\|ref\|ZP_02231345.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|166204912, gi... - gi\|166213937\|ref\|ZP_02239972.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167402218, gi... - gi\|167402218\|ref\|ZP_02307691.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167419412, gi... - gi\|167419412\|ref\|ZP_02311165.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|167054854, gi... - gi\|167426143\|ref\|ZP_02317896.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|167467129 - gi\|167467129\|ref\|ZP_02331833.1\| hypothetical protein YpesF_04345 [Yersinia pestis FV-1] gi\|162419082, gi... - gi\|77633476\|ref\|ZP_00795605.1\| hypothetical protein YpesA_01003136 [Yersinia pestis Angola], gi\|1624... gi\|153946991, gi... - gi\|77631305\|ref\|ZP_00793891.1\| hypothetical protein YpseI_01002686 [Yersinia pseudotuberculosis IP 3... gi\|169752618, gi... - gi\|170026084\|ref\|YP_001722589.1\| hypothetical protein YPK_3871 [Yersinia pseudotuberculosis YPIII], ... gi\|165915553, gi... - gi\|89103634\|ref\|ZP_01176203.1\| hypothetical protein Ypesb_01002350 [Yersinia pestis biovar Orientali... gi\|186893716, gi... - gi\|186893716\|ref\|YP_001870828.1\| hypothetical protein YPTS_0382 [Yersinia pseudotuberculosis PB1/+],... gi\|108809971, gi... - gi\|108809971\|ref\|YP_653887.1\| hypothetical protein YPA_3981 [Yersinia pestis Antiqua], gi\|108781884\|... gi\|229904014, gi... - gi\|229904014\|ref\|ZP_04519127.1\| putative exported protein [Yersinia pestis Nepal516], gi\|229679784\|g...	183.0	[0..5]	[253..2]
gi\|72610154, gi\|... - gi\|74016683\|ref\|ZP_00687308.1\| putative outer membrane protein [Burkholderia ambifaria AMMD], gi\|726...	183.0	[0..5]	[254..7]
gi\|77957096, gi\|... - gi\|77957096\|ref\|ZP_00821161.1\| hypothetical protein YberA_01002651 [Yersinia bercovieri ATCC 43970],...	182.0	[0..5]	[253..2]
gi\|238724692, gi... - gi\|77974402\|ref\|ZP_00829942.1\| hypothetical protein YfreA_01001648 [Yersinia frederiksenii ATCC 3364...	180.0	[0..5]	[253..2]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFFKKNLTTA AICAALSVAA FSAMATDSTD TELTIIGEYT PGACTPVVTG GGIVDYGKHH  60
   61 NSALNPTGKS NKLVQLGRKN STLNITCTAP TLIAVTSKDN RQSTIVALND TSYIEKAYDT 120
  121 LVDMK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.52
Match:	2j2zB
Description:	No description for 2j2zB was found.

Predicted Domain #2

Region A:
Residues: [126-254]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GTKNAFGLGS APNGQKIGAA SIGIDRSNGG IHAADDTGEI PVDLIQTDHW SAATPTWKAS  60
   61 SNGAFCSLTS CSAIERGYSV AKTGELTPVA ITAVTFPLLI DAAVNDNTIL GSDETIKLDG 120
  121 NVTISVQYL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	21.744727
Match:	PF06551.3
Description:	No description for PF06551.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits