YRC Public Data Repository - Protein Structure Prediction

Protein:	GLPR_ECOLI
Organism:	Escherichia coli
Length:	252 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GLPR_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|77978684, gi\|... - gi\|77978684\|ref\|ZP_00834110.1\| COG1349: Transcriptional regulators of sugar metabolism [Yersinia int...	239.0	[0..1]	[252..1]
gi\|255054070, gi... - gi\|255054070\|ref\|ZP_05306318.1\| transcriptional regulator, DeoR family [Pectobacterium wasabiae WPP1... gi\|253690290, gi... - gi\|253690290\|ref\|YP_003019480.1\| transcriptional regulator, DeoR family [Pectobacterium carotovorum ... gi\|50123057, gi\|... - gi\|50123057\|ref\|YP_052224.1\| DNA-binding transcriptional repressor GlpR [Pectobacterium atrosepticum...	238.0	[0..1]	[252..1]
gi\|77975069, gi\|... - gi\|77975069\|ref\|ZP_00830606.1\| COG1349: Transcriptional regulators of sugar metabolism [Yersinia fre...	236.0	[0..1]	[252..1]
gi\|91191480, gi\|... - gi\|91223394\|ref\|ZP_01258659.1\| transcriptional regulator, DeoR family protein [Vibrio alginolyticus ...	236.0	[0..1]	[251..1]
gi\|238786231, gi... - gi\|77956417\|ref\|ZP_00820518.1\| COG1349: Transcriptional regulators of sugar metabolism [Yersinia ber... gi\|77960074, gi\|... - gi\|77960074\|ref\|ZP_00823969.1\| COG1349: Transcriptional regulators of sugar metabolism [Yersinia mol...	236.0	[0..1]	[252..1]
gi\|254229357, gi... - gi\|75855918\|ref\|ZP_00763557.1\| COG1349: Transcriptional regulators of sugar metabolism [Vibrio sp. E...	236.0	[0..1]	[251..1]
gi\|89074567, gi\|... - gi\|89074567\|ref\|ZP_01161039.1\| transcriptional regulator, DeoR family protein [Photobacterium sp. SK...	235.0	[0..1]	[251..1]
gi\|115514811, gi... - gi\|117625687\|ref\|YP_859010.1\| DNA-binding transcriptional repressor GlpR [Escherichia coli APEC O1],...	235.0	[0..1]	[252..13]
gi\|191171550, gi... - gi\|191171550\|ref\|ZP_03033098.1\| glycerol-3-phosphate regulon repressor [Escherichia coli F11], gi\|19... gi\|215266775, gi... - gi\|215488703\|ref\|YP_002331134.1\| DNA-binding transcriptional repressor GlpR [Escherichia coli O127:H... gi\|218367248, gi... - gi\|218560479\|ref\|YP_002393392.1\| DNA-binding transcriptional repressor GlpR [Escherichia coli S88], ... gi\|218429262, gi... - gi\|218691698\|ref\|YP_002399910.1\| DNA-binding transcriptional repressor GlpR [Escherichia coli ED1a],... gi\|227883557, gi... - gi\|227883557\|ref\|ZP_04001362.1\| DNA-binding transcriptional repressor GlpR [Escherichia coli 83972],... gi\|110345247, gi... - gi\|110643655\|ref\|YP_671385.1\| DNA-binding transcriptional repressor GlpR [Escherichia coli 536], gi\|...	235.0	[0..1]	[252..1]
gi\|75241487 - gi\|75241487\|ref\|ZP_00725332.1\| COG1349: Transcriptional regulators of sugar metabolism [Escherichia ...	235.0	[0..1]	[252..13]

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Predicted Domain #1

Region A:
Residues: [1-70]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQTQRHNGI IELVKQQGYV STEELVEHFS VSPQTIRRDL NELAEQNLIL RHHGGAALPS  60
   61 SSVNTPWHDR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10.045757
Match:	2gqqA
Description:	No description for 2gqqA was found.

Predicted Domain #2

Region A:
Residues: [71-252]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KATQTEEKER IARKVAEQIP NGSTLFIDIG TTPEAVAHAL LNHSNLRIVT NNLNVANTLM  60
   61 VKEDFRIILA GGELRSRDGG IIGEATLDFI SQFRLDFGIL GISGIDSDGS LLEFDYHEVR 120
  121 TKRAIIENSR HVMLVVDHSK FGRNAMVNMG SISMVDAVYT DAPPPVSVMQ VLTDHHIQLE 180
  181 LC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.39794
Match:	2pjmA
Description:	No description for 2pjmA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits