YRC Public Data Repository - Protein Structure Prediction

Protein:	GLPD_ECOLI
Organism:	Escherichia coli
Length:	501 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GLPD_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|83571650, gi\|... - gi\|83571650\|ref\|ZP_00923090.1\| COG0578: Glycerol-3-phosphate dehydrogenase [Shigella dysenteriae 101...	325.0	[0..19]	[497..19]
gi\|77975070, gi\|... - gi\|77975070\|ref\|ZP_00830607.1\| COG0578: Glycerol-3-phosphate dehydrogenase [Yersinia frederiksenii A...	325.0	[0..27]	[496..27]
gi\|49613587, gi\|... - gi\|50123061\|ref\|YP_052228.1\| glycerol-3-phosphate dehydrogenase [Pectobacterium atrosepticum SCRI104...	322.0	[0..27]	[497..27]
gi\|77978683 - gi\|77978683\|ref\|ZP_00834109.1\| COG0578: Glycerol-3-phosphate dehydrogenase [Yersinia intermedia ATCC...	322.0	[0..27]	[496..27]
gi\|238715200, gi... - gi\|77959562\|ref\|ZP_00823580.1\| COG0578: Glycerol-3-phosphate dehydrogenase [Yersinia bercovieri ATCC...	321.0	[0..27]	[496..27]
gi\|606361\|gb\|AAA... - Sn-glycerol-3-phosphate dehydrogenase [Escherichia coli] gi\|606361 - gi\|606361\|gb\|AAA58224.1\| Sn-glycerol-3-phosphate dehydrogenase [Escherichia coli]	321.0	[0..25]	[497..25]
gi\|30043553, gi\|... - gi\|30065291\|ref\|NP_839462.1\| glycerol-3-phosphate dehydrogenase [Shigella flexneri 2a str. 2457T], g...	321.0	[0..21]	[497..12]
gi\|26110456, gi\|... - gi\|26250027\|ref\|NP_756067.1\| Aerobic glycerol-3-phosphate dehydrogenase [Escherichia coli CFT073], g...	319.0	[0..27]	[497..32]
gi\|81242907, gi\|... - gi\|82778759\|ref\|YP_405108.1\| glycerol-3-phosphate dehydrogenase [Shigella dysenteriae Sd197], gi\|812...	319.0	[0..27]	[497..27]
gi\|238797008, gi... - gi\|77963050\|ref\|ZP_00826864.1\| COG0578: Glycerol-3-phosphate dehydrogenase [Yersinia mollaretii ATCC...	319.0	[0..27]	[496..27]

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Predicted Domain #1

Region A:
Residues: [1-501]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METKDLIVIG GGINGAGIAA DAAGRGLSVL MLEAQDLACA TSSASSKLIH GGLRYLEHYE  60
   61 FRLVSEALAE REVLLKMAPH IAFPMRFRLP HRPHLRPAWM IRIGLFMYDH LGKRTSLPGS 120
  121 TGLRFGANSV LKPEIKRGFE YSDCWVDDAR LVLANAQMVV RKGGEVLTRT RATSARRENG 180
  181 LWIVEAEDID TGKKYSWQAR GLVNATGPWV KQFFDDGMHL PSPYGIRLIK GSHIVVPRVH 240
  241 TQKQAYILQN EDKRIVFVIP WMDEFSIIGT TDVEYKGDPK AVKIEESEIN YLLNVYNTHF 300
  301 KKQLSRDDIV WTYSGVRPLC DDESDSPQAI TRDYTLDIHD ENGKAPLLSV FGGKLTTYRK 360
  361 LAEHALEKLT PYYQGIGPAW TKESVLPGGA IEGDRDDYAA RLRRRYPFLT ESLARHYART 420
  421 YGSNSELLLG NAGTVSDLGE DFGHEFYEAE LKYLVDHEWV RRADDALWRR TKQGMWLNAD 480
  481 QQSRVSQWLV EYTQQRLSLA S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.09691
Match:	1pj5A
Description:	Crystal structure of dimethylglycine oxidase of Arthrobacter globiformis in complex with acetate
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.40171956669527	bayes_pls_golite062009
oxidoreductase activity	0.383635162195694	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: