YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|150260842, gi...
Organism:	Yersinia pestis CA88-4125
Length:	108 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|150260842, gi....

Description	E-value	Query Range	Subject Range
gi\|49531025, gi\|... - gi\|50085049\|ref\|YP_046559.1\| putative nitrate reductase (electron transfer subunit) and putative nit...	7.0E-26	[2..107]	[13..118]
gi\|73538686, gi\|... - gi\|73538686\|ref\|YP_299053.1\| assimilatory nitrite reductase (NAD(P)H) small subunit [Ralstonia eutro...	1.0E-25	[3..108]	[9..114]
gi\|48855077 - gi\|48855077\|ref\|ZP_00309237.1\| COG2146: Ferredoxin subunits of nitrite reductase and ring-hydroxylat... gi\|110637736, gi... - gi\|110637736\|ref\|YP_677943.1\| assimilatory nitrite reductase (NAD(P)H) small subunit [Cytophaga hutc...	8.0E-25	[4..106]	[13..115]
gi\|91708661, gi\|... - gi\|91774674\|ref\|YP_544430.1\| nitrite reductase (NAD(P)H) large subunit, NirD [Methylobacillus flagel...	9.0E-25	[3..108]	[26..130]
gi\|113529223, gi... - gi\|116694724\|ref\|YP_728935.1\| nitrite reductase, NAD(P)H-dependent,ferredoxinsubunit [Ralstonia eutr...	1.0E-24	[3..108]	[9..114]
gi\|194559292, gi... - gi\|84354563\|ref\|ZP_00979467.1\| COG2146: Ferredoxin subunits of nitrite reductase and ring-hydroxylat... gi\|67094660, gi\|... - gi\|67657606\|ref\|ZP_00454983.1\| Rieske [2Fe-2S] region [Burkholderia cenocepacia AU 1054], gi\|6709466... gi\|118708437, gi... - gi\|170738149\|ref\|YP_001779409.1\| nitrite reductase (NAD(P)H), small subunit [Burkholderia cenocepaci... gi\|116650599, gi... - gi\|67668086\|ref\|ZP_00465280.1\| Rieske [2Fe-2S] region [Burkholderia cenocepacia HI2424], gi\|67098343...	1.0E-24	[3..108]	[8..114]
gi\|161358962, gi... - gi\|82534113\|ref\|ZP_00893157.1\| hypothetical protein Bpse110_02004599 [Burkholderia pseudomallei 1106... gi\|237510341, gi... - gi\|237510341\|ref\|ZP_04523056.1\| nitrite reductase [NAD(P)H], small subunit [Burkholderia pseudomalle... gi\|194524159, gi... - gi\|83618015\|ref\|ZP_00928491.1\| COG2146: Ferredoxin subunits of nitrite reductase and ring-hydroxylat... gi\|226198112, gi... - gi\|226198112\|ref\|ZP_03793684.1\| nitrite reductase [NAD(P)H], small subunit [Burkholderia pseudomalle... gi\|82528786, gi\|... - gi\|82528786\|ref\|ZP_00888049.1\| COG2146: Ferredoxin subunits of nitrite reductase and ring-hydroxylat... gi\|67638334, gi\|... - gi\|67638334\|ref\|ZP_00437270.1\| COG2146: Ferredoxin subunits of nitrite reductase and ring-hydroxylat... gi\|67641070, gi\|... - gi\|67641070\|ref\|ZP_00439857.1\| nitrite reductase [NAD(P)H], small subunit [Burkholderia mallei GB8 h... gi\|83622173, gi\|... - gi\|83622173\|ref\|ZP_00932511.1\| COG2146: Ferredoxin subunits of nitrite reductase and ring-hydroxylat... gi\|157811672, gi... - gi\|83677587\|ref\|ZP_00939332.1\| COG2146: Ferredoxin subunits of nitrite reductase and ring-hydroxylat... gi\|124382633, gi... - gi\|124382633\|ref\|YP_001024163.1\| nitrite reductase [NAD(P)H], small subunit [Burkholderia mallei NCT... gi\|53722265, gi\|... - gi\|53722265\|ref\|YP_111250.1\| nitrite reductase [Burkholderia pseudomallei K96243], gi\|52212679\|emb\|C... gi\|52422668, gi\|... - gi\|53716698\|ref\|YP_105748.1\| nitrite reductase [NAD(P)H], small subunit [Burkholderia mallei ATCC 23... gi\|167922880 - gi\|167922880\|ref\|ZP_02509971.1\| nitrite reductase [Burkholderia pseudomallei BCC215] gi\|194317353, gi... - gi\|254174200\|ref\|ZP_04880862.1\| nitrite reductase [NAD(P)H], small subunit [Burkholderia mallei ATCC... gi\|254356792, gi... - gi\|87313979\|ref\|ZP_01095040.1\| COG2146: Ferredoxin subunits of nitrite reductase and ring-hydroxylat... gi\|167849729 - gi\|167849729\|ref\|ZP_02475237.1\| nitrite reductase [Burkholderia pseudomallei B7210] gi\|76584276, gi\|... - gi\|76819803\|ref\|YP_335401.1\| nitrite reductase (NAD(P)H), small subunit [Burkholderia pseudomallei 1... gi\|167898326 - gi\|167898326\|ref\|ZP_02485727.1\| nitrite reductase [Burkholderia pseudomallei 7894] gi\|217418651, gi... - gi\|217418651\|ref\|ZP_03450158.1\| nitrite reductase [NAD(P)H], small subunit [Burkholderia pseudomalle... gi\|67646874, gi\|... - gi\|67646874\|ref\|ZP_00445125.1\| COG2146: Ferredoxin subunits of nitrite reductase and ring-hydroxylat... gi\|126443056, gi... - gi\|67735030\|ref\|ZP_00486074.1\| COG2146: Ferredoxin subunits of nitrite reductase and ring-hydroxylat... gi\|167004199, gi... - gi\|243060416\|gb\|EES42602.1\| nitrite reductase [NAD(P)H], small subunit [Burkholderia mallei PRL-20],... gi\|99909097, gi\|... - gi\|99909097\|ref\|ZP_01316671.1\| hypothetical protein Bpse1_03003925 [Burkholderia pseudomallei 1655],... gi\|67681844, gi\|... - gi\|90291294\|ref\|ZP_01210924.1\| hypothetical protein Bpse17_02004035 [Burkholderia pseudomallei 1710a... gi\|194519274, gi... - gi\|67759002\|ref\|ZP_00497749.1\| COG2146: Ferredoxin subunits of nitrite reductase and ring-hydroxylat... gi\|167819890 - gi\|167819890\|ref\|ZP_02451570.1\| nitrite reductase [Burkholderia pseudomallei 91] gi\|85063076 - gi\|85063076\|ref\|ZP_01023930.1\| COG2146: Ferredoxin subunits of nitrite reductase and ring-hydroxylat... gi\|167828279 - gi\|167828279\|ref\|ZP_02459750.1\| nitrite reductase [Burkholderia pseudomallei 9] gi\|121596556, gi... - gi\|84520185\|ref\|ZP_01007322.1\| COG2146: Ferredoxin subunits of nitrite reductase and ring-hydroxylat... gi\|167723750 - gi\|167723750\|ref\|ZP_02406986.1\| nitrite reductase [Burkholderia pseudomallei DM98] gi\|67754118, gi\|... - gi\|67754118\|ref\|ZP_00493034.1\| COG2146: Ferredoxin subunits of nitrite reductase and ring-hydroxylat... gi\|167742718 - gi\|167742718\|ref\|ZP_02415492.1\| nitrite reductase [Burkholderia pseudomallei 14]	2.0E-24	[2..108]	[8..116]
gi\|54308620, gi\|... - gi\|54308620\|ref\|YP_129640.1\| nitrite reductase small subunit [Photobacterium profundum SS9], gi\|4691...	2.0E-24	[1..108]	[1..108]
gi\|77970080, gi\|... - gi\|78062195\|ref\|YP_372103.1\| nitrite reductase (NAD(P)H), small subunit [Burkholderia sp. 383], gi\|7...	3.0E-24	[3..108]	[8..115]
gi\|84359714, gi\|... - gi\|84359714\|ref\|ZP_00984445.1\| COG2146: Ferredoxin subunits of nitrite reductase and ring-hydroxylat...	7.0E-24	[3..108]	[8..114]

Back

Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQWIPLCPL NDILPGSGVC GLIKQQQVAV FRPYADEQVF AISNIDPFAQ ASVLSRGLIA  60
   61 EHQGELWVAS PLKKQHFRLR DGFCLEDEDR SVTHYDVRVR DGMVQVNA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.154902
Match:	2jo6A
Description:	No description for 2jo6A was found.

Predicted functions:

Term	Confidence	Notes
ubiquinol-cytochrome-c reductase activity	4.14993304522786	bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor	4.14993304522786	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	3.9271223895757	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	3.76503174823869	bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors	3.73915691834026	bayes_pls_golite062009
oxidoreductase activity, acting on other nitrogenous compounds as donors	3.30005888638622	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	2.96070332606483	bayes_pls_golite062009
cation transmembrane transporter activity	2.63750663816019	bayes_pls_golite062009
ion transmembrane transporter activity	2.33992572389215	bayes_pls_golite062009
electron carrier activity	2.2277730493777	bayes_pls_golite062009
oxidoreductase activity	1.79992184100284	bayes_pls_golite062009
catalytic activity	0.746741393172769	bayes_pls_golite062009
iron-sulfur cluster binding	0.189086586993314	bayes_pls_golite062009
metal cluster binding	0.189086586993314	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: