YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|149290246, gi...
Organism:	Yersinia pestis CA88-4125
Length:	232 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|149290246, gi....

Description	E-value	Query Range	Subject Range
gi\|77978179 - gi\|77978179\|ref\|ZP_00833611.1\| COG0546: Predicted phosphatases [Yersinia intermedia ATCC 29909]	5.0E-48	[1..232]	[1..232]
gi\|229811380, gi... - gi\|229845694\|ref\|ZP_04465817.1\| phosphoglycolate phosphatase [Haemophilus influenzae 6P18H1], gi\|229... gi\|144985848, gi... - gi\|145633479\|ref\|ZP_01789208.1\| phosphoglycolate phosphatase [Haemophilus influenzae 3655], gi\|14498... GPH_HAEI8 - Phosphoglycolate phosphatase OS=Haemophilus influenzae (strain 86-028NP) GN=NTHI0697 PE=3 SV=1	1.0E-47	[3..222]	[1..224]
gi\|77962692 - gi\|77962692\|ref\|ZP_00826509.1\| COG0546: Predicted phosphatases [Yersinia mollaretii ATCC 43969]	2.0E-47	[1..232]	[1..232]
gi\|145272121, gi... - gi\|145638526\|ref\|ZP_01794135.1\| phosphoglycolate phosphatase [Haemophilus influenzae PittII], gi\|145... gi\|53733330 - gi\|53733330\|ref\|ZP_00156383.2\| COG0546: Predicted phosphatases [Haemophilus influenzae R2866]	4.0E-47	[3..222]	[1..224]
GPH_HAEIN - Phosphoglycolate phosphatase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) G... GPH_HAEIN - Phosphoglycolate phosphatase OS=Haemophilus influenzae GN=gph PE=3 SV=1	7.0E-47	[3..222]	[1..224]
gi\|108809304, gi... - gi\|108809304\|ref\|YP_653220.1\| phosphoglycolate phosphatase [Yersinia pestis Antiqua], gi\|108781217\|g... gi\|108814069, gi... - gi\|108814069\|ref\|YP_649836.1\| phosphoglycolate phosphatase [Yersinia pestis Nepal516], gi\|108777717\|... gi\|21960940, gi\|... - gi\|22127809\|ref\|NP_671232.1\| phosphoglycolate phosphatase [Yersinia pestis KIM], gi\|21960940\|gb\|AAM8... gi\|45440020, gi\|... - gi\|45440020\|ref\|NP_991559.1\| phosphoglycolate phosphatase [Yersinia pestis biovar Microtus str. 9100... gi\|145597406, gi... - gi\|145597406\|ref\|YP_001161481.1\| phosphoglycolate phosphatase [Yersinia pestis Pestoides F], gi\|1452...	9.0E-47	[1..232]	[12..243]
gi\|51591317, gi\|... - gi\|51598035\|ref\|YP_072226.1\| phosphoglycolate phosphatase [Yersinia pseudotuberculosis IP 32953], gi...	2.0E-46	[1..232]	[12..243]
GPH_ERWCT - Phosphoglycolate phosphatase OS=Erwinia carotovora subsp. atroseptica GN=ECA4088 PE=3 SV=1 GPH_PECAS - Phosphoglycolate phosphatase OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=ECA...	2.0E-46	[1..231]	[1..231]
gi\|77975036 - gi\|77975036\|ref\|ZP_00830573.1\| COG0546: Predicted phosphatases [Yersinia frederiksenii ATCC 33641]	2.0E-46	[1..232]	[1..232]
GPH_YERPS - Phosphoglycolate phosphatase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=YPTB3745 ... gi\|186700260, gi... - gi\|186897234\|ref\|YP_001874346.1\| phosphoglycolate phosphatase [Yersinia pseudotuberculosis PB1/+], g... GPH_YERPS - Phosphoglycolate phosphatase OS=Yersinia pseudotuberculosis GN=YPTB3745 PE=3 SV=2	3.0E-46	[1..232]	[1..232]

Back

Predicted Domain #1

Region A:
Residues: [1-232]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKFKAIRGV AFDLDGTLVD SAPGLARAID MALAHQGLPA AGEALVSTWI GNGADVLVER  60
   61 ALHWAGREHN AQLVAQTREL FDHYYAKTVE QGSQLFPQVK ATLAQLAANG LPIGLITNKP 120
  121 TPFVAPLLTS LGISDYFSVI IGGDDVVVKK PHPAPLYLLL GKLGLHAREM LFVGDSRNDI 180
  181 MAAQAAGCPC IGLTYGYNYG EAIATSHPDC VLAHFADLLP AIGLPSLKDQ EV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.0
Match:	2hszA
Description:	No description for 2hszA was found.

Predicted functions:

Term	Confidence	Notes
phosphatase activity	4.95181073884363	bayes_pls_golite062009
phosphoric ester hydrolase activity	4.77239634899576	bayes_pls_golite062009
hydrolase activity	4.28050357117094	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	4.03655952210286	bayes_pls_golite062009
phosphoprotein phosphatase activity	2.04527248780903	bayes_pls_golite062009
catalytic activity	1.92340854382984	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: