YRC Public Data Repository - Protein Structure Prediction

Protein:	FTSY_ECOLI
Organism:	Escherichia coli
Length:	497 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FTSY_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|192932549, gi... - gi\|75260249\|ref\|ZP_00731517.1\| COG0552: Signal recognition particle GTPase [Escherichia coli E22], g... gi\|191169497, gi... - gi\|75227170\|ref\|ZP_00713978.1\| COG0552: Signal recognition particle GTPase [Escherichia coli B7A], g... gi\|218362783, gi... - gi\|218556015\|ref\|YP_002388928.1\| cell division protein FtsY [Escherichia coli IAI1], gi\|218362783\|em...	403.0	[0..1]	[497..1]
gi\|75179909, gi\|... - gi\|75179909\|ref\|ZP_00699896.1\| COG0552: Signal recognition particle GTPase [Shigella boydii BS512], ... gi\|81247238, gi\|... - gi\|82545827\|ref\|YP_409774.1\| cell division protein FtsY [Shigella boydii Sb227], gi\|81247238\|gb\|ABB6...	402.0	[0..1]	[497..1]
gi\|194414996, gi... - gi\|75211829\|ref\|ZP_00711893.1\| COG0552: Signal recognition particle GTPase [Escherichia coli B171], ...	401.0	[0..1]	[497..1]
gi\|194420701, gi... - gi\|83571611\|ref\|ZP_00923051.1\| COG0552: Signal recognition particle GTPase [Shigella dysenteriae 101...	401.0	[0..1]	[497..1]
gi\|157158382, gi... - gi\|75188236\|ref\|ZP_00701503.1\| COG0552: Signal recognition particle GTPase [Escherichia coli E24377A... gi\|218697147, gi... - gi\|218697147\|ref\|YP_002404814.1\| cell division protein FtsY [Escherichia coli 55989], gi\|218353879\|e...	400.0	[0..1]	[497..1]
gi\|77961777 - gi\|77961777\|ref\|ZP_00825608.1\| COG0552: Signal recognition particle GTPase [Yersinia mollaretii ATCC...	399.0	[0..1]	[493..1]
gi\|75516071, gi\|... - gi\|75516071\|ref\|ZP_00738189.1\| COG0552: Signal recognition particle GTPase [Escherichia coli 53638],... gi\|194435805, gi... - gi\|83588674\|ref\|ZP_00927298.1\| COG0552: Signal recognition particle GTPase [Escherichia coli 101-1],... gi\|251786712, gi... - gi\|251786712\|ref\|YP_003001016.1\| hypothetical protein B21_03266 [Escherichia coli BL21], gi\|24237898... gi\|254290138, gi... - gi\|254290138\|ref\|YP_003055886.1\| fused Signal Recognition Particle (SRP) receptor: membrane binding ... gi\|254163388, gi... - gi\|254163388\|ref\|YP_003046496.1\| fused Signal Recognition Particle (SRP) receptor: membrane binding ...	398.0	[0..1]	[497..1]
gi\|115514866, gi... - gi\|117625742\|ref\|YP_859065.1\| cell division protein FtsY [Escherichia coli APEC O1], gi\|115514866\|gb...	398.0	[0..1]	[497..1]
gi\|191170595, gi... - gi\|75242739\|ref\|ZP_00726483.1\| COG0552: Signal recognition particle GTPase [Escherichia coli F11], g... gi\|110345296, gi... - gi\|110643704\|ref\|YP_671434.1\| cell division protein FtsY [Escherichia coli 536], gi\|110345296\|gb\|ABG...	397.0	[0..1]	[497..1]
gi\|75237063, gi\|... - gi\|75237063\|ref\|ZP_00721119.1\| COG0552: Signal recognition particle GTPase [Escherichia coli E110019...	397.0	[0..1]	[497..1]

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Predicted Domain #1

Region A:
Residues: [1-189]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKEKKRGFF SWLGFGQKEQ TPEKETEVQN EQPVVEEIVQ AQEPVKASEQ AVEEQPQAHT  60
   61 EAEAETFAAD VVEVTEQVAE SEKAQPEAEV VAQPEPVVEE TPEPVAIERE ELPLPEDVNA 120
  121 EAVSPEEWQA EAETVEIVEA AEEEAAKEEI TDEELETALA AEAAEEAVMV VPPAEEEQPV 180
  181 EEIAQEQEK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.5
Match:	2j63A
Description:	No description for 2j63A was found.

Predicted Domain #2

Region A:
Residues: [190-497]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTKEGFFARL KRSLLKTKEN LGSGFISLFR GKKIDDDLFE ELEEQLLIAD VGVETTRKII  60
   61 TNLTEGASRK QLRDAEALYG LLKEEMGEIL AKVDEPLNVE GKAPFVILMV GVNGVGKTTT 120
  121 IGKLARQFEQ QGKSVMLAAG DTFRAAAVEQ LQVWGQRNNI PVIAQHTGAD SASVIFDAIQ 180
  181 AAKARNIDVL IADTAGRLQN KSHLMEELKK IVRVMKKLDV EAPHEVMLTI DASTGQNAVS 240
  241 QAKLFHEAVG LTGITLTKLD GTAKGGVIFS VADQFGIPIR YIGVGERIED LRPFKADDFI 300
  301 EALFARED

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	95.39794
Match:	2qy9A
Description:	No description for 2qy9A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits