YRC Public Data Repository - Protein Structure Prediction

Protein:	FTSE_ECOLI
Organism:	Escherichia coli
Length:	222 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FTSE_ECOLI.

Description	E-value	Query Range	Subject Range
GLNQ_GEOSE - Glutamine transport ATP-binding protein GlnQ OS=Geobacillus stearothermophilus GN=glnQ PE=2 SV=1	300.0	[0..1]	[222..1]
gi\|56420511, gi\|... - gi\|56420511\|ref\|YP_147829.1\| glutamine ABC transporter ATP-binding protein [Geobacillus kaustophilus...	300.0	[0..1]	[222..1]
gi\|222450603, gi... - gi\|222526724\|ref\|YP_002571195.1\| ABC transporter related [Chloroflexus sp. Y-400-fl], gi\|222450603\|g... gi\|163670063, gi... - gi\|76261358\|ref\|ZP_00768971.1\| ABC transporter related [Chloroflexus aurantiacus J-10-fl], gi\|761637...	299.0	[0..1]	[222..10]
gi\|78357805, gi\|... - gi\|78357805\|ref\|YP_389254.1\| ATPase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20], gi\|...	297.0	[0..1]	[222..1]
gi\|46448579, gi\|... - gi\|46579166\|ref\|YP_009974.1\| amino acid ABC transporter, ATP-binding protein [Desulfovibrio vulgaris... gi\|120603260, gi... - gi\|120603260\|ref\|YP_967660.1\| ABC transporter related [Desulfovibrio vulgaris subsp. vulgaris DP4], ... gi\|241907569, gi... - gi\|241907569\|ref\|ZP_04792146.1\| ABC transporter related protein [Desulfovibrio vulgaris RCH1], gi\|24...	297.0	[0..1]	[222..1]
gi\|82724967, gi\|... - gi\|82747099\|ref\|ZP_00909599.1\| ATPas [Clostridium beijerincki NCIMB 8052], gi\|82724967\|gb\|EAP59716.1...	296.0	[0..1]	[222..1]
gi\|45548601, gi\|... - ref\|ZP_00188632.1\| COG1126: ABC-type polar amino acid transport system, ATPase component [Rubrobacte...	296.0	[0..1]	[222..3]
gi\|41582998, gi\|... - gi\|42518712\|ref\|NP_964642.1\| ABC transporter ATPase component [Lactobacillus johnsonii NCC 533], gi\|...	296.0	[0..1]	[222..3]
gi\|21228043, gi\|... - gi\|21228043\|ref\|NP_633965.1\| glutamine transporter, ATP-binding protein [Methanosarcina mazei Go1], ...	295.0	[0..1]	[222..1]
gi\|55738561 - gb\|AAV62202.1\| amino acid (glutamine) ABC transporter ATP-binding protein [Streptococcus thermophilu... gi\|55738561, gi\|... - gi\|55822576\|ref\|YP_141017.1\| amino acid (glutamine) ABC transporter ATP-binding protein [Streptococc...	295.0	[0..1]	[221..5]

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Predicted Domain #1

Region A:
Residues: [1-222]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRFEHVSKA YLGGRQALQG VTFHMQPGEM AFLTGHSGAG KSTLLKLICG IERPSAGKIW  60
   61 FSGHDITRLK NREVPFLRRQ IGMIFQDHHL LMDRTVYDNV AIPLIIAGAS GDDIRRRVSA 120
  121 ALDKVGLLDK AKNFPIQLSG GEQQRVGIAR AVVNKPAVLL ADEPTGNLDD ALSEGILRLF 180
  181 EEFNRVGVTV LMATHDINLI SRRSYRMLTL SDGHLHGGVG HE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	75.221849
Match:	1z47A
Description:	Structure of the ATPase subunit CysA of the putative sulfate ATP-binding cassette (ABC) transporter from Alicyclobacillus acidocaldarius
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits