YRC Public Data Repository - Protein Structure Prediction

Protein:	PTFC1_ECOLI, FRY...
Organism:	Escherichia coli
Length:	415 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PTFC1_ECOLI, FRY....

Description	E-value	Query Range	Subject Range
gi\|58336738, gi\|... - gi\|58336738\|ref\|YP_193323.1\| sucrose PTS II ABC [Lactobacillus acidophilus NCFM], gi\|58254055\|gb\|AAV... gi\|33149353 - gi\|33149353\|gb\|AAO38866.1\| sucrose PTS transporter [Lactobacillus acidophilus]	223.0	[0..3]	[408..72]
gi\|116630280, gi... - gi\|23002973\|ref\|ZP_00046644.1\| hypothetical protein Lgas_03000980 [Lactobacillus gasseri ATCC 33323]... gi\|226819377 - gi\|226819377\|ref\|ZP_03808496.1\| fusion of IIA, IIB and IIC component of mannitol/fructose-specific p... gi\|23002973 - gi\|23002973\|ref\|ZP_00046644.1\| COG1299: Phosphotransferase system, fructose-specific IIC component [...	219.0	[0..3]	[406..276]
gi\|62516288, gi\|... - gi\|62516288\|ref\|ZP_00387645.1\| COG1299: Phosphotransferase system, fructose-specific IIC component [...	218.0	[0..15]	[406..285]
gi\|70734353, gi\|... - gi\|70734353\|ref\|YP_257993.1\| PTS system, fructose-specific IIBC component [Pseudomonas fluorescens P...	218.0	[0..1]	[402..204]
gi\|103423772, gi... - gi\|104774691\|ref\|YP_619671.1\| PTS system, fructose-specific enzyme IIABC component [Lactobacillus de...	218.0	[0..15]	[406..285]
gi\|18144243, gi\|... - gi\|18309566\|ref\|NP_561500.1\| PTS system [Clostridium perfringens str. 13], gi\|18144243\|dbj\|BAB80290....	217.0	[0..19]	[404..277]
gi\|22776518, gi\|... - gi\|23098293\|ref\|NP_691759.1\| PTS system fructose-specific enzyme II BC component [Oceanobacillus ihe...	214.0	[0..6]	[406..270]
gi\|71737234, gi\|... - gi\|71737234\|ref\|YP_273130.1\| phosphotransferase system, fructose-specific IIBC component [Pseudomona...	214.0	[0..1]	[403..204]
gi\|52785361, gi\|... - gi\|52785361\|ref\|YP_091190.1\| hypothetical protein BLi01598 [Bacillus licheniformis ATCC 14580], gi\|5...	214.0	[0..35]	[414..8]

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Predicted Domain #1

Region A:
Residues: [1-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIKKRSATV VPGASGAAAA VKNPQASKTS FWGELPQHVM SGISRMVPTL IMGGVILAFS  60
   61 QLIAYSWLKI PAEIGIMDAL NSGKFSGFDL SLLKFAWLSQ SFGGVLFGFA IPMFAAFVAN 120
  121 SIGGKLAFPA GFIGGLMSTQ PTQLLNFDPS TMQWATSSPV PSTF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [165-273]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IGALIISIVA GYLVKWMNQK IQLPDFLLAF KTTFLLPILS AIFVMLAMYY VITPFGGWIN  60
   61 GGIRTVLTAA GEKGALMYAM GIAAATAIDL GGPINKAAGF VAFSFTTDH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [274-415]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VLPVTARSIA IVIPPIGLGL ATIIDRRLTG KRLFNAQLYP QGKTAMFLAF MGISEGAIPF  60
   61 ALESPITAIP SYMVGAIVGS TAAVWLGAVQ WFPESAIWAW PLVTNLGVYM AGIALGAVIT 120
  121 ALMVVFLRLM MFRKGKLLID SL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits