YRC Public Data Repository - Protein Structure Prediction

Protein:	FRDC_ECOLI
Organism:	Escherichia coli
Length:	131 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FRDC_ECOLI.

Description	E-value	Query Range	Subject Range
FRDC_SHIBS - Fumarate reductase subunit C OS=Shigella boydii serotype 4 (strain Sb227) GN=frdC PE=3 SV=1	200.0	[0..1]	[131..1]
FRDC_SHIDS - Fumarate reductase subunit C OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=frdC PE=3 SV=1	199.0	[0..1]	[131..1]
gi\|171849106, gi... - gi\|90108812\|pdb\|2B76\|O Chain O, E. Coli Quinol Fumarate Reductase Frda E49q Mutation, gi\|90108808\|pd...	198.0	[0..2]	[131..1]
gi\|24054836, gi\|... - gi\|24115511\|ref\|NP_710021.1\| fumarate reductase subunit C [Shigella flexneri 2a str. 301], gi\|240548... FRDC_SHIFL - Fumarate reductase subunit C OS=Shigella flexneri GN=frdC PE=3 SV=1 gi\|30043793, gi\|... - gi\|30065529\|ref\|NP_839700.1\| fumarate reductase subunit C [Shigella flexneri 2a str. 2457T], gi\|3004...	195.0	[0..1]	[131..1]
gi\|197263825, gi... - gi\|197263825\|ref\|ZP_03163899.1\| fumarate reductase, cytochrome b subunit [Salmonella enterica subsp.... FRDC_SALA4 - Fumarate reductase subunit C OS=Salmonella agona (strain SL483) GN=frdC PE=3 SV=1 FRDC_SALSV - Fumarate reductase subunit C OS=Salmonella schwarzengrund (strain CVM19633) GN=frdC PE=3 SV=1 gi\|194472926, gi... - gi\|194472926\|ref\|ZP_03078910.1\| fumarate reductase, cytochrome b subunit [Salmonella enterica subsp.... FRDC_SALG2 - Fumarate reductase subunit C OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=frdC PE=3 SV=1 gi\|204323382, gi... - gi\|204926717\|ref\|ZP_03217919.1\| fumarate reductase, cytochrome b subunit [Salmonella enterica subsp.... gi\|200387160, gi... - gi\|200387160\|ref\|ZP_03213772.1\| fumarate reductase, cytochrome b subunit [Salmonella enterica subsp.... FRDC_SALPK - Fumarate reductase subunit C OS=Salmonella paratyphi A (strain AKU_12601) GN=frdC PE=3 SV=1 gi\|205336323, gi... - gi\|205336323\|gb\|EDZ23087.1\| fumarate reductase, cytochrome b subunit [Salmonella enterica subsp. ent... gi\|197289959, gi... - gi\|197289959\|gb\|EDY29318.1\| fumarate reductase, cytochrome b subunit [Salmonella enterica subsp. ent... gi\|205334243, gi... - gi\|205334243\|gb\|EDZ21007.1\| fumarate reductase, cytochrome b subunit [Salmonella enterica subsp. ent... gi\|167994777, gi... - gi\|205327404\|gb\|EDZ14168.1\| fumarate reductase, cytochrome b subunit [Salmonella enterica subsp. ent... FRDC_SALNS - Fumarate reductase subunit C OS=Salmonella newport (strain SL254) GN=frdC PE=3 SV=1 gi\|205341110, gi... - gi\|205341110\|gb\|EDZ27874.1\| fumarate reductase, cytochrome b subunit [Salmonella enterica subsp. en... FRDC_SALTY - Fumarate reductase subunit C OS=Salmonella typhimurium GN=frdC PE=3 SV=1 FRDC_SALTY - Fumarate reductase subunit C OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=frdC... gi\|195630648, gi... - gi\|195630648\|gb\|EDX49260.1\| fumarate reductase, cytochrome b subunit [Salmonella enterica subsp. ent... FRDC_SALTI - Fumarate reductase subunit C OS=Salmonella typhi GN=frdC PE=3 SV=1 gi\|168263305, gi... - gi\|205347966\|gb\|EDZ34597.1\| fumarate reductase, cytochrome b subunit [Salmonella enterica subsp. ent... FRDC_SALCH - Fumarate reductase subunit C OS=Salmonella choleraesuis GN=frdC PE=3 SV=1 gi\|213585254 - gi\|213585254\|ref\|ZP_03367080.1\| fumarate reductase subunit C [Salmonella enterica subsp. enterica se... FRDC_SALCH - Fumarate reductase subunit C OS=Salmonella choleraesuis GN=frdC PE=3 SV=1 gi\|213428691 - gi\|213428691\|ref\|ZP_03361441.1\| fumarate reductase subunit C [Salmonella enterica subsp. enterica se... gi\|213052297 - gi\|213052297\|ref\|ZP_03345175.1\| fumarate reductase subunit C [Salmonella enterica subsp. enterica se... FRDC_SALEP - Fumarate reductase subunit C OS=Salmonella enteritidis PT4 (strain P125109) GN=frdC PE=3 SV=1 gi\|238912806 - gi\|238912806\|ref\|ZP_04656643.1\| fumarate reductase subunit C [Salmonella enterica subsp. enterica se... gi\|214003376 - gi\|214003376\|ref\|ZP_03414111.1\| fumarate reductase subunit C [Salmonella enterica subsp. enterica se... gi\|213852160 - gi\|213852160\|ref\|ZP_03381692.1\| fumarate reductase subunit C [Salmonella enterica subsp. enterica se... FRDC_SALPB - Fumarate reductase subunit C OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=frdC PE=3 SV... FRDC_SALPB - Fumarate reductase subunit C OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=frdC PE=3 SV... gi\|213646924 - gi\|213646924\|ref\|ZP_03376977.1\| fumarate reductase subunit C [Salmonella enterica subsp. enterica se... FRDC_SALPA - Fumarate reductase subunit C OS=Salmonella paratyphi A GN=frdC PE=3 SV=1 gi\|213621850 - gi\|213621850\|ref\|ZP_03374633.1\| fumarate reductase subunit C [Salmonella enterica subsp. enterica se... FRDC_SALTY - Fumarate reductase subunit C OS=Salmonella typhimurium GN=frdC PE=3 SV=1 FRDC_SALTI - Fumarate reductase subunit C OS=Salmonella typhi GN=frdC PE=3 SV=1 gi\|16763163 - gi\|16763163\|ref\|NP_458780.1\| fumarate reductase subunit C [Salmonella enterica subsp. enterica serov... gi\|29140281, gi\|... - gi\|29144642\|ref\|NP_807984.1\| fumarate reductase subunit C [Salmonella enterica subsp. enterica serov... gi\|205322010, gi... - gi\|205322010\|gb\|EDZ09849.1\| fumarate reductase, cytochrome b subunit [Salmonella enterica subsp. ent... lcl\|NC_016856.1_... - [gene=frdC] [protein=fumarate reductase subunit C] [protein_id=YP_005240655.1] [location=complement(... FRDC_SALCH - Fumarate reductase subunit C OS=Salmonella choleraesuis (strain SC-B67) GN=frdC PE=3 SV=1 FRDC_SALPA - Fumarate reductase subunit C OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=frdC PE=3 SV=1	188.0	[0..1]	[131..1]
gi\|77977159, gi\|... - gi\|77977159\|ref\|ZP_00832616.1\| COG3029: Fumarate reductase subunit C [Yersinia intermedia ATCC 29909...	184.0	[0..1]	[130..1]
FRDC_PHOPR - Fumarate reductase subunit C OS=Photobacterium profundum GN=frdC PE=3 SV=1 FRDC_PHOPR - Fumarate reductase subunit C OS=Photobacterium profundum (strain SS9) GN=frdC PE=3 SV=1	184.0	[0..3]	[128..2]
FRDC_YERPG - Fumarate reductase subunit C OS=Yersinia pestis bv. Antiqua (strain Angola) GN=frdC PE=3 SV=1	183.0	[0..1]	[130..1]
FRDC_YERPP - Fumarate reductase subunit C OS=Yersinia pestis (strain Pestoides F) GN=frdC PE=3 SV=1 gi\|89103961, gi\|... - gi\|89103961\|ref\|ZP_01176519.1\| COG3029: Fumarate reductase subunit C [Yersinia pestis biovar Orienta... FRDC_YERPA - Fumarate reductase subunit C OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=frdC PE=3 SV=1 FRDC_YERPN - Fumarate reductase subunit C OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=frdC PE=3 SV=1 gi\|45440367, gi\|... - gi\|45440367\|ref\|NP_991906.1\| fumarate reductase subunit C [Yersinia pestis biovar Microtus str. 9100... gi\|166214036, gi... - gi\|166214036\|ref\|ZP_02240071.1\| fumarate reductase, C subunit [Yersinia pestis biovar Antiqua str. B... gi\|22124529, gi\|... - gi\|22124529\|ref\|NP_667952.1\| fumarate reductase subunit C [Yersinia pestis KIM], gi\|21957325\|gb\|AAM8... gi\|166011852, gi... - gi\|166011852\|ref\|ZP_02232750.1\| fumarate reductase, C subunit [Yersinia pestis biovar Antiqua str. E... gi\|115346172, gi... - gi\|218927561\|ref\|YP_002345436.1\| fumarate reductase subunit C [Yersinia pestis CO92], gi\|16120693\|re... gi\|167419160, gi... - gi\|167419160\|ref\|ZP_02310913.1\| fumarate reductase, C subunit [Yersinia pestis biovar Orientalis str... FRDC_YERPS - Fumarate reductase subunit C OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=frdC PE=3... gi\|167400629, gi... - gi\|167400629\|ref\|ZP_02306138.1\| fumarate reductase, C subunit [Yersinia pestis biovar Antiqua str. U... gi\|167469173 - gi\|167469173\|ref\|ZP_02333877.1\| fumarate reductase, C subunit [Yersinia pestis FV-1] gi\|167057625, gi... - gi\|167423455\|ref\|ZP_02315208.1\| fumarate reductase, C subunit [Yersinia pestis biovar Mediaevalis st... gi\|229706301, gi... - gi\|229836617\|ref\|ZP_04456783.1\| fumarate reductase (anaerobic), membrane anchor subunit [Yersinia pe... FRDC_YERPB - Fumarate reductase subunit C OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=frdC PE=3 ... gi\|229696595, gi... - gi\|229840229\|ref\|ZP_04460388.1\| fumarate reductase (anaerobic), membrane anchor subunit [Yersinia pe... gi\|150260598, gi... - gi\|150260598\|ref\|ZP_01917326.1\| fumarate reductase hydrophobic protein [Yersinia pestis CA88-4125], ... FRDC_YERPY - Fumarate reductase subunit C OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=frdC PE=3... gi\|229690617, gi... - gi\|229842307\|ref\|ZP_04462462.1\| fumarate reductase (anaerobic), membrane anchor subunit [Yersinia pe... FRDC_YERP3 - Fumarate reductase subunit C OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=frdC ... gi\|165926779, gi... - gi\|165926779\|ref\|ZP_02222611.1\| fumarate reductase, C subunit [Yersinia pestis biovar Orientalis str... FRDC_YERPS - Fumarate reductase subunit C OS=Yersinia pseudotuberculosis GN=frdC PE=3 SV=1 FRDC_YERPE - Fumarate reductase subunit C OS=Yersinia pestis GN=frdC PE=3 SV=1	182.0	[0..1]	[130..1]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTKRKPYVR PMTSTWWKKL PFYRFYMLRE GTAVPAVWFS IELIFGLFAL KNGPEAWAGF  60
   61 VDFLQNPVIV IINLITLAAA LLHTKTWFEL APKAANIIVK DEKMGPEPII KSLWAVTVVA 120
  121 TIVILFVALY W

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.39794
Match:	1kf6C
Description:	Fumarate reductase subunit FrdC
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits