YRC Public Data Repository - Protein Structure Prediction

Protein:	FLIR_ECOLI
Organism:	Escherichia coli
Length:	261 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FLIR_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|15025140, gi\|... - gi\|15895417\|ref\|NP_348766.1\| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium acet... gi\|25500687 - pir\|\|G97164 fusion of flagellar biosynthesis proteins FliR and FlhB [imported] - Clostridium acetobu...	188.0	[0..10]	[260..3]
gi\|33601553, gi\|... - gi\|33601553\|ref\|NP_889113.1\| flagellar biosynthetic protein [Bordetella bronchiseptica RB50], gi\|335...	186.0	[0..1]	[258..1]
gi\|33592490, gi\|... - gi\|33592490\|ref\|NP_880134.1\| flagellar biosynthetic protein FliR [Bordetella pertussis Tohama I], gi...	185.0	[0..1]	[258..1]
gi\|90411035, gi\|... - gi\|90411035\|ref\|ZP_01219049.1\| flagellar biosynthesis protein [Photobacterium profundum 3TCK], gi\|90...	181.0	[0..2]	[257..1]
gi\|73539699, gi\|... - gi\|73539699\|ref\|YP_300066.1\| flagellar biosynthesis protein FliR [Ralstonia eutropha JMP134], gi\|721...	180.0	[0..1]	[256..1]
gi\|46912553, gi\|... - gi\|54308127\|ref\|YP_129147.1\| flagellar biosynthesis protein FliR [Photobacterium profundum SS9], gi\|...	179.0	[0..2]	[257..1]
gi\|126697834, gi... - gi\|126697834\|ref\|YP_001086731.1\| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium ...	177.0	[0..16]	[260..1]
gi\|218321854, gi... - gi\|218708835\|ref\|YP_002416456.1\| flagellar biosynthesis protein FliR [Vibrio splendidus LGP32], gi\|2... gi\|86146124, gi\|... - gi\|86146124\|ref\|ZP_01064450.1\| flagellar biosynthesis protein [Vibrio sp. MED222], gi\|85836071\|gb\|EA...	177.0	[0..2]	[257..1]
gi\|145210290, gi... - gi\|145598594\|ref\|YP_001162670.1\| flagellar biosynthesis protein FliR [Yersinia pestis Pestoides F], ... gi\|108807190, gi... - gi\|108807190\|ref\|YP_651106.1\| flagellar biosynthetic protein FliR [Yersinia pestis Antiqua], gi\|1087...	175.0	[0..1]	[258..25]
gi\|89048797, gi\|... - gi\|89075525\|ref\|ZP_01161936.1\| flagellar biosynthesis protein [Photobacterium sp. SKA34], gi\|8904879...	175.0	[0..2]	[257..1]

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Predicted Domain #1

Region A:
Residues: [1-163]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQVTSEQWL SWLNLYFWPL LRVLALISTA PILSERSVPK RVKLGLAMMI TFAIAPSLPA  60
   61 NDVPVFSFFA LWLAVQQILI GIALGFTMQF AFAAVRTAGE IIGLQMGLSF ATFVDPASHL 120
  121 NMPVLARIMD MLALLLFLTF NGHLWLISLL VDTFHTLPIG GEP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [164-261]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LNSNAFLALT KAGSLIFLNG LMLALPLITL LLTLNLALGL LNRMAPQLSI FVIGFPLTLT  60
   61 VGISLMAALM PLIAPFCEHL FSEIFNLLAD IISELPLI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits