YRC Public Data Repository - Protein Structure Prediction

Protein:	FLIP_ECOLI
Organism:	Escherichia coli
Length:	245 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FLIP_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|218558805, gi... - gi\|218558805\|ref\|YP_002391718.1\| flagellar biosynthesis protein FliP [Escherichia coli S88], gi\|2183... gi\|91211166, gi\|... - gi\|91211166\|ref\|YP_541152.1\| flagellar biosynthesis protein FliP [Escherichia coli UTI89], gi\|910727... gi\|117624088, gi... - gi\|117624088\|ref\|YP_853001.1\| flagellar biosynthesis protein FliP [Escherichia coli APEC O1], gi\|115...	313.0	[0..1]	[245..1]
gi\|227885623, gi... - gi\|227885623\|ref\|ZP_04003428.1\| flagellar biosynthesis protein FliP [Escherichia coli 83972], gi\|227... gi\|190906399, gi... - gi\|75239158\|ref\|ZP_00723135.1\| COG1338: Flagellar biosynthesis pathway, component FliP [Escherichia ... gi\|110615465, gi... - gi\|110805917\|ref\|YP_689437.1\| flagellar biosynthesis protein FliP [Shigella flexneri 5 str. 8401], g... gi\|161485898 - gi\|161485898\|ref\|NP_707833.2\| flagellar biosynthesis protein FliP [Shigella flexneri 2a str. 301] gi\|218699491, gi... - gi\|218699491\|ref\|YP_002407120.1\| flagellar biosynthesis protein FliP [Escherichia coli IAI39], gi\|21... gi\|26108621, gi\|... - gi\|26248217\|ref\|NP_754257.1\| flagellar biosynthesis protein FliP [Escherichia coli CFT073], gi\|26108... gi\|110642054, gi... - gi\|110642054\|ref\|YP_669784.1\| flagellar biosynthesis protein FliP [Escherichia coli 536], gi\|1103436...	312.0	[0..1]	[245..1]
gi\|124531425, gi... - gi\|124531425\|ref\|ZP_01701709.1\| flagellar biosynthetic protein FliP [Escherichia coli B], gi\|1244985... gi\|187427203, gi... - gi\|75175126\|ref\|ZP_00695456.1\| COG1338: Flagellar biosynthesis pathway, component FliP [Shigella boy... gi\|209912629, gi... - gi\|209919370\|ref\|YP_002293454.1\| flagellar biosynthesis protein FliP [Escherichia coli SE11], gi\|209... gi\|218705441, gi... - gi\|218705441\|ref\|YP_002412960.1\| flagellar biosynthesis protein FliP [Escherichia coli UMN026], gi\|2... gi\|170019719, gi... - gi\|170019719\|ref\|YP_001724673.1\| flagellar biosynthesis protein FliP [Escherichia coli ATCC 8739], g...	312.0	[0..1]	[245..1]
gi\|188487812, gi... - gi\|75511435\|ref\|ZP_00734110.1\| COG1338: Flagellar biosynthesis pathway, component FliP [Escherichia ...	311.0	[0..1]	[245..1]
gi\|75196003, gi\|... - gi\|75196003\|ref\|ZP_00706073.1\| COG1338: Flagellar biosynthesis pathway, component FliP [Escherichia ...	311.0	[0..1]	[245..1]
gi\|74312488, gi\|... - gi\|74312488\|ref\|YP_310907.1\| flagellar biosynthesis protein FliP [Shigella sonnei Ss046], gi\|7385596...	308.0	[0..1]	[245..1]
gi\|78100273 - gi\|78100273\|gb\|ABB20928.1\| flagellar biosynthesis/transport protein [Citrobacter koseri] gi\|157145258, gi... - gi\|157145258\|ref\|YP_001452577.1\| flagellar biosynthesis protein FliP [Citrobacter koseri ATCC BAA-89...	308.0	[0..1]	[245..1]
gi\|194713184, gi... - gi\|194737682\|ref\|YP_002115013.1\| flagellar biosynthetic protein FliP [Salmonella enterica subsp. ent... gi\|197247593, gi... - gi\|197247593\|ref\|YP_002146044.1\| flagellar biosynthetic protein FliP [Salmonella enterica subsp. ent... gi\|197264056, gi... - gi\|197264056\|ref\|ZP_03164130.1\| flagellar biosynthetic protein FliP [Salmonella enterica subsp. ente... gi\|197939225, gi... - gi\|198244709\|ref\|YP_002215107.1\| flagellar biosynthetic protein FliP [Salmonella enterica subsp. ent... gi\|195634044, gi... - gi\|195634044\|gb\|EDX52396.1\| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica... gi\|205340666, gi... - gi\|205340666\|gb\|EDZ27430.1\| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica... gi\|194444637, gi... - gi\|194444637\|ref\|YP_002041244.1\| flagellar biosynthetic protein FliP [Salmonella enterica subsp. ent... gi\|194455181, gi... - gi\|194468817\|ref\|ZP_03074801.1\| flagellar biosynthetic protein FliP [Salmonella enterica subsp. ente... gi\|160864246, gi... - gi\|161502899\|ref\|YP_001570011.1\| flagellar biosynthesis protein FliP [Salmonella enterica subsp. ari... gi\|167552788, gi... - gi\|205322623\|gb\|EDZ10462.1\| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica... gi\|205331887, gi... - gi\|205331887\|gb\|EDZ18651.1\| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica... gi\|197288073, gi... - gi\|197288073\|gb\|EDY27460.1\| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica... gi\|16503220, gi\|... - gi\|25316655\|pir\|\|AD0753 flagellar biosynthetic protein FliP [imported] - Salmonella enterica subsp. ... gi\|213650743 - gi\|213650743\|ref\|ZP_03380796.1\| flagellar biosynthesis protein FliP [Salmonella enterica subsp. ente... gi\|29137012, gi\|... - gi\|29141385\|ref\|NP_804727.1\| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enteric... gi\|213855268 - gi\|213855268\|ref\|ZP_03383508.1\| flagellar biosynthesis protein FliP [Salmonella enterica subsp. ente... gi\|224583522, gi... - gi\|224583522\|ref\|YP_002637320.1\| flagellar biosynthesis protein [Salmonella enterica subsp. enterica... gi\|213163376 - gi\|213163376\|ref\|ZP_03349086.1\| flagellar biosynthesis protein FliP [Salmonella enterica subsp. ente... gi\|213417182 - gi\|213417182\|ref\|ZP_03350326.1\| flagellar biosynthesis protein FliP [Salmonella enterica subsp. ente... gi\|16760923 - gi\|16760923\|ref\|NP_456540.1\| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enteric... gi\|213424995 - gi\|213424995\|ref\|ZP_03357745.1\| flagellar biosynthesis protein FliP [Salmonella enterica subsp. ente... gi\|213584779 - gi\|213584779\|ref\|ZP_03366605.1\| flagellar biosynthesis protein FliP [Salmonella enterica subsp. ente... gi\|199603508, gi... - gi\|200391063\|ref\|ZP_03217674.1\| flagellar biosynthetic protein FliP [Salmonella enterica subsp. ente... gi\|204931035, gi... - gi\|204931035\|ref\|ZP_03221861.1\| flagellar biosynthetic protein FliP [Salmonella enterica subsp. ente... gi\|62128187, gi\|... - gi\|62180554\|ref\|YP_216971.1\| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enteric... gi\|207856508, gi... - gi\|207856508\|ref\|YP_002243159.1\| flagellar biosynthesis protein FliP [Salmonella enterica subsp. ent... gi\|213023112 - gi\|213023112\|ref\|ZP_03337559.1\| flagellar biosynthesis protein FliP [Salmonella enterica subsp. ente...	307.0	[0..1]	[245..1]
FLIP_SALTY - Flagellar biosynthetic protein FliP OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) ... gi\|167993554, gi... - gi\|205328373\|gb\|EDZ15137.1\| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica... lcl\|NC_016856.1_... - [gene=fliP] [protein=flagellar biosynthesis protein FliP] [protein_id=YP_005237949.1] [location=2076... FLIP_SALTY - Flagellar biosynthetic protein fliP OS=Salmonella typhimurium GN=fliP PE=1 SV=1 FLIP_SALTY - Flagellar biosynthetic protein fliP OS=Salmonella typhimurium GN=fliP PE=1 SV=1	306.0	[0..1]	[245..1]
gi\|56413108, gi\|... - gi\|56413108\|ref\|YP_150183.1\| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enteric... gi\|197093511, gi... - gi\|197362034\|ref\|YP_002141671.1\| flagellar biosynthesis protein FliP [Salmonella enterica subsp. ent...	304.0	[0..1]	[245..1]

Back

Predicted Domain #1

Region A:
Residues: [1-245]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRLLSVAPV LLWLITPLAF AQLPGITSQP LPGGGQSWSL PVQTLVFITS LTFIPAILLM  60
   61 MTSFTRIIIV FGLLRNALGT PSAPPNQVLL GLALFLTFFI MSPVIDKIYV DAYQPFSEEK 120
  121 ISMQEALEKG AQPLREFMLR QTREADLGLF ARLANTGPLQ GPEAVPMRIL LPAYVTSELK 180
  181 TAFQIGFTIF IPFLIIDLVI ASVLMALGMM MVPPATIALP FKLMLFVLVD GWQLLVGSLA 240
  241 QSFYS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	125.0
Match:	PF00813.11
Description:	No description for PF00813.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits