YRC Public Data Repository - Protein Structure Prediction

Protein:	FLIK_ECOLI
Organism:	Escherichia coli
Length:	375 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FLIK_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|25354753 - pir\|\|B85812 flagellar hook-length control protein [imported] - Escherichia coli (strain O157:H7, sub... gi\|15802378, gi\|... - gi\|15802378\|ref\|NP_288404.1\| flagellar hook-length control protein [Escherichia coli O157:H7 EDL933]...	145.0	[0..1]	[375..1]
gi\|208810723, gi... - gi\|208810723\|ref\|ZP_03252599.1\| flagellar hook-length control protein Flik [Escherichia coli O157:H7... gi\|195939249 - gi\|195939249\|ref\|ZP_03084631.1\| flagellar hook-length control protein [Escherichia coli O157:H7 str.... gi\|13362150, gi\|... - gi\|15831936\|ref\|NP_310709.1\| flagellar hook-length control protein [Escherichia coli O157:H7 str. Sa... gi\|189375722, gi... - gi\|189375722\|gb\|EDU94138.1\| flagellar hook-length control protein Flik [Escherichia coli O157:H7 str... gi\|189370187, gi... - gi\|189370187\|gb\|EDU88603.1\| flagellar hook-length control protein Flik [Escherichia coli O157:H7 str... gi\|217318229, gi... - gi\|217328882\|ref\|ZP_03444963.1\| flagellar hook-length control protein Flik [Escherichia coli O157:H7... gi\|209398445, gi... - gi\|209398445\|ref\|YP_002271059.1\| flagellar hook-length control protein Flik [Escherichia coli O157:H... gi\|208739763, gi... - gi\|208819640\|ref\|ZP_03259960.1\| flagellar hook-length control protein Flik [Escherichia coli O157:H7... gi\|208731368, gi... - gi\|208817025\|ref\|ZP_03258145.1\| flagellar hook-length control protein Flik [Escherichia coli O157:H7... gi\|189354912, gi... - gi\|189354912\|gb\|EDU73331.1\| flagellar hook-length control protein Flik [Escherichia coli O157:H7 str... gi\|168751872, gi... - gi\|188014161\|gb\|EDU52283.1\| flagellar hook-length control protein Flik [Escherichia coli O157:H7 str... gi\|13362150, gi\|... - gi\|15831936\|ref\|NP_310709.1\| flagellar hook-length control protein [Escherichia coli O157:H7], gi\|13... gi\|168783340, gi... - gi\|188999294\|gb\|EDU68280.1\| flagellar hook-length control protein Flik [Escherichia coli O157:H7 str... gi\|168777370, gi... - gi\|187767400\|gb\|EDU31244.1\| flagellar hook-length control protein Flik [Escherichia coli O157:H7 str... gi\|189359743, gi... - gi\|189359743\|gb\|EDU78162.1\| flagellar hook-length control protein Flik [Escherichia coli O157:H7 str... gi\|254592993, gi... - gi\|254793593\|ref\|YP_003078430.1\| flagellar hook-length control protein [Escherichia coli O157:H7 str... gi\|209766840, gi... - pir\|\|B99964 flagellar hook-length control protein [imported] - Escherichia coli (strain O157:H7, sub... gi\|189365573, gi... - gi\|189365573\|gb\|EDU83989.1\| flagellar hook-length control protein Flik [Escherichia coli O157:H7 str...	145.0	[0..1]	[375..1]
gi\|157157886, gi... - gi\|75190961\|ref\|ZP_00704228.1\| COG3144: Flagellar hook-length control protein [Escherichia coli E243...	144.0	[0..1]	[375..1]
gi\|191168303, gi... - gi\|75228501\|ref\|ZP_00715138.1\| COG3144: Flagellar hook-length control protein [Escherichia coli B7A]...	144.0	[0..1]	[375..1]
gi\|124498545, gi... - gi\|124531430\|ref\|ZP_01701714.1\| flagellar hook-length control protein [Escherichia coli B], gi\|12449... gi\|169754652, gi... - gi\|170019724\|ref\|YP_001724678.1\| flagellar hook-length control protein [Escherichia coli ATCC 8739],... gi\|188495149, gi... - gi\|75511440\|ref\|ZP_00734115.1\| COG3144: Flagellar hook-length control protein [Escherichia coli 5363...	144.0	[0..1]	[375..1]
gi\|192955537, gi... - gi\|75233936\|ref\|ZP_00718389.1\| COG3144: Flagellar hook-length control protein [Escherichia coli E110...	144.0	[0..1]	[375..1]
gi\|26108616, gi\|... - gi\|26248212\|ref\|NP_754252.1\| flagellar hook-length control protein [Escherichia coli CFT073], gi\|261... gi\|227885628, gi... - gi\|227885628\|ref\|ZP_04003433.1\| flagellar hook-length control protein [Escherichia coli 83972], gi\|2...	143.0	[0..1]	[375..1]
gi\|75239163, gi\|... - gi\|75239163\|ref\|ZP_00723140.1\| COG3144: Flagellar hook-length control protein [Escherichia coli F11]... gi\|110343641, gi... - gi\|110642049\|ref\|YP_669779.1\| flagellar hook-length control protein [Escherichia coli 536], gi\|11034...	143.0	[0..1]	[375..1]
gi\|24052328, gi\|... - gi\|24113318\|ref\|NP_707828.1\| flagellar hook-length control protein [Shigella flexneri 2a str. 301], ... gi\|110615460, gi... - gi\|110805912\|ref\|YP_689432.1\| flagellar hook-length control protein [Shigella flexneri 5 str. 8401],... gi\|30041634, gi\|... - gi\|30063382\|ref\|NP_837553.1\| flagellar hook-length control protein [Shigella flexneri 2a str. 2457T]...	143.0	[0..1]	[375..1]
gi\|218365569, gi... - gi\|218558800\|ref\|YP_002391713.1\| flagellar hook-length control protein [Escherichia coli S88], gi\|21... gi\|91072735, gi\|... - gi\|91211161\|ref\|YP_541147.1\| flagellar hook-length control protein [Escherichia coli UTI89], gi\|9107... gi\|117624083, gi... - gi\|117624083\|ref\|YP_852996.1\| flagellar hook-length control protein [Escherichia coli APEC O1], gi\|1...	142.0	[0..1]	[375..1]

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Predicted Domain #1

Region A:
Residues: [1-177]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRLAPLITA DVDTTTLPGG KASDAAQDFL ALLSEALAGE TTTDKAAPQL LVATDKPTTK  60
   61 GEPLISDIVS DAQQANLLIP VDETPPVIND EQSTSTPLTT AQTMALAAVA DKNTTKDEKA 120
  121 DDLNEDVTAS LSALFAMLPG FDNTPKVTDA PSTVLPTEKP TLFTKLTSEQ LTTAQPD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [178-375]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DAPGTPAQPL TPLVAEAQSK AEVISTPSPV TAAASPLITP HQTQPLPTVA APVLSAPLGS  60
   61 HEWQQSLSQH ISLFTRQGQQ SAELRLHPQD LGEVQISLKV DDNQAQIQMV SPHQHVRAAL 120
  121 EAALPVLRTQ LAESGIQLGQ SNISGESFSG QQQAASQQQQ SQRTANHEPL AGEDDDTLPV 180
  181 PVSLQGRVTG NSGVDIFA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	51.267606
Match:	PF02120.7
Description:	No description for PF02120.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits