YRC Public Data Repository - Protein Structure Prediction

Protein:	FLGH_ECOLI
Organism:	Escherichia coli
Length:	232 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FLGH_ECOLI.

Description	E-value	Query Range	Subject Range
FLGH_SHIB3 - Flagellar L-ring protein OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=flgH PE=3 SV...	318.0	[0..1]	[232..1]
gi\|24112487, gi\|... - ref\|NP_706997.1\| Flagellar basal body L-ring protein precursor [Shigella flexneri 2a str. 301], gb\|... gi\|91071805, gi\|... - gi\|91210231\|ref\|YP_540217.1\| flagellar basal body L-ring protein [Escherichia coli UTI89], gi\|910718...	308.0	[0..1]	[232..6]
gi\|205357317, gi... - gi\|205357317\|ref\|ZP_02346782.2\| flagellar L-ring protein FlgH [Salmonella enterica subsp. enterica s... gi\|199602182, gi... - gi\|200389737\|ref\|ZP_03216348.1\| flagellar L-ring protein FlgH [Salmonella enterica subsp. enterica s... gi\|62127330, gi\|... - gi\|62179697\|ref\|YP_216114.1\| flagellar basal body L-ring protein [Salmonella enterica subsp. enteric...	308.0	[0..1]	[232..4]
gi\|26107620, gi\|... - gi\|26247219\|ref\|NP_753259.1\| flagellar basal body L-ring protein [Escherichia coli CFT073], gi\|26107...	308.0	[0..1]	[232..6]
gi\|110805096, gi... - gi\|110805096\|ref\|YP_688616.1\| flagellar basal body L-ring protein [Shigella flexneri 5 str. 8401], g... gi\|110342847, gi... - gi\|110641255\|ref\|YP_668985.1\| flagellar basal body L-ring protein [Escherichia coli 536], gi\|1103428... gi\|237706935, gi... - gi\|237706935\|ref\|ZP_04537416.1\| flagellar basal body L-ring protein [Escherichia sp. 3_2_53FAA], gi\|... gi\|253773897, gi... - gi\|253773897\|ref\|YP_003036728.1\| flagellar L-ring protein [Escherichia coli BL21(DE3)], gi\|253324941... gi\|4062657 - dbj\|BAA35888.1\| Flagellar basal body L-ring protein precursor [Escherichia coli K12] gi\|170020525, gi... - gi\|170020525\|ref\|YP_001725479.1\| flagellar basal body L-ring protein [Escherichia coli ATCC 8739], g... gi\|117623265, gi... - gi\|117623265\|ref\|YP_852178.1\| flagellar basal body L-ring protein [Escherichia coli APEC O1], gi\|115... gi\|124532259, gi... - gi\|124532259\|ref\|ZP_01702178.1\| flagellar L-ring protein [Escherichia coli B], gi\|124498097\|gb\|EAY45...	307.0	[0..1]	[232..4]
FLGH_SALEP - Flagellar L-ring protein OS=Salmonella enteritidis PT4 (strain P125109) GN=flgH PE=3 SV=1 gi\|213051797 - gi\|213051797\|ref\|ZP_03344675.1\| flagellar basal body L-ring protein [Salmonella enterica subsp. ente... gi\|213582040 - gi\|213582040\|ref\|ZP_03363866.1\| flagellar basal body L-ring protein [Salmonella enterica subsp. ente... gi\|213865502 - gi\|213865502\|ref\|ZP_03387621.1\| flagellar basal body L-ring protein [Salmonella enterica subsp. ente... FLGH_SALPK - Flagellar L-ring protein OS=Salmonella paratyphi A (strain AKU_12601) GN=flgH PE=3 SV=1 FLGH_SALPA - Flagellar L-ring protein OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=flgH PE=3 SV=1 FLGH_SALTY - Flagellar L-ring protein OS=Salmonella typhimurium GN=flgH PE=3 SV=1 FLGH_SALCH - Flagellar L-ring protein OS=Salmonella choleraesuis GN=flgH PE=3 SV=2 lcl\|NC_016856.1_... - [gene=flgH] [protein=flagellar basal body L-ring protein] [protein_id=YP_005236935.1] [location=1220... FLGH_SALCH - Flagellar L-ring protein OS=Salmonella choleraesuis (strain SC-B67) GN=flgH PE=3 SV=2 FLGH_SALTY - Flagellar L-ring protein OS=Salmonella typhimurium GN=flgH PE=3 SV=1 FLGH_SALTI - Flagellar L-ring protein OS=Salmonella typhi GN=flgH PE=3 SV=1 FLGH_SALTI - Flagellar L-ring protein OS=Salmonella typhi GN=flgH PE=3 SV=1 gi\|238911000 - gi\|238911000\|ref\|ZP_04654837.1\| flagellar basal body L-ring protein [Salmonella enterica subsp. ente... FLGH_SALTY - Flagellar L-ring protein OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=flgH PE=... gi\|29142173, gi\|... - gi\|29142173\|ref\|NP_805515.1\| flagellar basal body L-ring protein [Salmonella enterica subsp. enteric... FLGH_SALCH - Flagellar L-ring protein OS=Salmonella choleraesuis GN=flgH PE=3 SV=2 gi\|16760056 - gi\|16760056\|ref\|NP_455673.1\| flagellar basal body L-ring protein [Salmonella enterica subsp. enteric... FLGH_SALPA - Flagellar L-ring protein OS=Salmonella paratyphi A GN=flgH PE=3 SV=1	307.0	[0..1]	[232..1]
gi\|191168479, gi... - gi\|75228347\|ref\|ZP_00714997.1\| COG2063: Flagellar basal body L-ring protein [Escherichia coli B7A], ...	307.0	[0..1]	[232..1]
sp\|B7UP93\|FLGH_ECO27 - Flagellar L-ring protein OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=flgH PE=3 SV=1 FLGH_ECOL6 - Flagellar L-ring protein OS=Escherichia coli O6 GN=flgH PE=3 SV=2 FLGH_ECO27 - Flagellar L-ring protein OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=flgH PE=3 SV=1 FLGH_ECOL6 - Flagellar L-ring protein OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=flgH PE=3...	307.0	[0..1]	[232..1]
FLGH_SHIDS - Flagellar L-ring protein OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=flgH PE=3 SV=1	305.0	[0..1]	[232..1]
FLGH_SHIBS - Flagellar L-ring protein OS=Shigella boydii serotype 4 (strain Sb227) GN=flgH PE=3 SV=1	303.0	[0..1]	[232..1]

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Predicted Domain #1

Region A:
Residues: [1-232]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKNAAHTYA ISSLLVLSLT GCAWIPSTPL VQGATSAQPV PGPTPVANGS IFQSAQPINY  60
   61 GYQPLFEDRR PRNIGDTLTI VLQENVSASK SSSANASRDG KTNFGFDTVP RYLQGLFGNA 120
  121 RADVEASGGN TFNGKGGANA SNTFSGTLTV TVDQVLVNGN LHVVGEKQIA INQGTEFIRF 180
  181 SGVVNPRTIS GSNTVPSTQV ADARIEYVGN GYINEAQNMG WLQRFFLNLS PM

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits