YRC Public Data Repository - Protein Structure Prediction

Protein:	FLGH_AGRFC
Organism:	Agrobacterium tumefaciens str. C58
Length:	239 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FLGH_AGRFC.

Description	E-value	Query Range	Subject Range
FLGH_SINMW - Flagellar L-ring protein OS=Sinorhizobium medicae (strain WSM419) GN=flgH PE=3 SV=1	283.0	[0..4]	[239..2]
FLGH_RHIME - Flagellar L-ring protein OS=Rhizobium meliloti GN=flgH PE=3 SV=3 FLGH_RHIME - Flagellar L-ring protein OS=Rhizobium meliloti (strain 1021) GN=flgH PE=3 SV=3	282.0	[0..4]	[239..2]
gi\|12057225 - gi\|12057225\|gb\|AAB81417.2\| FlgH [Sinorhizobium meliloti]	282.0	[0..4]	[239..2]
gi\|116250486, gi... - gi\|116250486\|ref\|YP_766324.1\| flagellar basal body L-ring protein [Rhizobium leguminosarum bv. vicia...	265.0	[0..18]	[239..17]
gi\|86280418, gi\|... - gi\|86356316\|ref\|YP_468208.1\| flagellar basal body L-ring protein [Rhizobium etli CFN 42], gi\|8628041... gi\|190695646, gi... - gi\|190890367\|ref\|YP_001976909.1\| flagellar L-ring protein [Rhizobium etli CIAT 652], gi\|190695646\|gb...	264.0	[0..18]	[239..17]
gi\|37681980 - gi\|37681980\|gb\|AAQ97868.1\| FlgH [Photorhabdus luminescens] gi\|37525844, gi\|... - gi\|37525844\|ref\|NP_929188.1\| flagellar basal body L-ring protein [Photorhabdus luminescens subsp. la...	258.0	[0..1]	[238..22]
FLGH_PHOLL - Flagellar L-ring protein OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565... FLGH_PHOLL - Flagellar L-ring protein OS=Photorhabdus luminescens subsp. laumondii GN=flgH PE=3 SV=2	256.0	[0..1]	[238..1]
FLGH_PSEAB - Flagellar L-ring protein OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=flgH PE=3 SV=1	253.0	[0..1]	[238..1]
FLGH_SHIB3 - Flagellar L-ring protein OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=flgH PE=3 SV...	253.0	[0..5]	[239..8]
FLGH_PSEAE - Flagellar L-ring protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12... FLGH_PSEA8 - Flagellar L-ring protein OS=Pseudomonas aeruginosa (strain LESB58) GN=flgH PE=3 SV=1 gi\|194545204, gi... - gi\|84322075\|ref\|ZP_00970420.1\| COG2063: Flagellar basal body L-ring protein [Pseudomonas aeruginosa ... gi\|84328545, gi\|... - gi\|84328545\|ref\|ZP_00976549.1\| COG2063: Flagellar basal body L-ring protein [Pseudomonas aeruginosa ... FLGH_PSEAE - Flagellar L-ring protein OS=Pseudomonas aeruginosa GN=flgH PE=3 SV=1 gi\|107100528 - gi\|107100528\|ref\|ZP_01364446.1\| hypothetical protein PaerPA_01001553 [Pseudomonas aeruginosa PACS2]	253.0	[0..1]	[238..1]

Back

Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTRRLPALL LPLALLAGCQ NNQTLKEIGN APAMSPIGSG LQFSQTPQMG MYPKQPKHMA  60
   61 SGYSLWSDSQ GALFKDLRAL NIGDILTVNI QINDKADFDN ETERNRTNAS GLNWKAKAQI 120
  121 LGWTPDA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [128-239]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSSIKYGSDT DTQAKGKTKR SEKLTLLVAA VVTGILENGN LIISGSQEVR VNHEIRILNV  60
   61 GGIVRPQDVD AQNIISYERI AEARISYGGR GRLTEVQQPP VGQQVVDLFS PL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits