YRC Public Data Repository - Protein Structure Prediction

Protein:	FLGD_ECOLI
Organism:	Escherichia coli
Length:	231 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FLGD_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|36785269, gi\|... - gi\|37525840\|ref\|NP_929184.1\| flagellar basal body rod modification protein [Photorhabdus luminescens...	195.0	[0..1]	[231..1]
gi\|85774325, gi\|... - gi\|86157814\|ref\|YP_464599.1\| flagellar hook capping protein [Anaeromyxobacter dehalogenans 2CP-C], g...	187.0	[0..5]	[229..2]
gi\|150964786, gi... - gi\|94415937\|ref\|ZP_01295769.1\| hypothetical protein PaerP_01002266 [Pseudomonas aeruginosa PA7], gi\|...	187.0	[0..1]	[230..1]
gi\|76812017, gi\|... - gi\|76812017\|ref\|YP_331877.1\| basal-body rod modification protein FlgD [Burkholderia pseudomallei 171...	185.0	[0..2]	[230..214]
gi\|74057148, gi\|... - gi\|74317653\|ref\|YP_315393.1\| flagellar basal body rod modification protein [Thiobacillus denitrifica...	185.0	[0..3]	[230..1]
gi\|49611164, gi\|... - gi\|50120638\|ref\|YP_049805.1\| flagellar basal body rod modification protein [Pectobacterium atrosepti...	184.0	[0..1]	[231..1]
Q66BU3\|Q66BU3_YERPS - Basal-body rod modification protein FlgD - Yersinia pseudotuberculosis gi\|186895113, gi... - gi\|186895113\|ref\|YP_001872225.1\| flagellar basal body rod modification protein [Yersinia pseudotuber... gi\|169751182, gi... - gi\|170024648\|ref\|YP_001721153.1\| flagellar basal body rod modification protein [Yersinia pseudotuber... gi\|51589292, gi\|... - gi\|51596010\|ref\|YP_070201.1\| flagellar basal body rod modification protein [Yersinia pseudotuberculo...	184.0	[0..1]	[231..1]
gi\|114320056, gi... - gi\|78702772\|ref\|ZP_00867197.1\| flagellar basal-body rod modification protein FlgD [Alkalilimnicola e...	184.0	[0..7]	[230..2]
gi\|152961717, gi... - gi\|77628873\|ref\|ZP_00791459.1\| COG1843: Flagellar hook capping protein [Yersinia pseudotuberculosis ...	183.0	[0..1]	[231..1]
gi\|76884153, gi\|... - gi\|77165839\|ref\|YP_344364.1\| flagellar hook capping protein [Nitrosococcus oceani ATCC 19707], gi\|76... gi\|207089692 - gi\|207089692\|gb\|EDZ66963.1\| flagellar hook capping protein, putative [Nitrosococcus oceani AFC27] gi\|254433359, gi... - gi\|254433359\|ref\|ZP_05046867.1\| flagellar hook capping protein, putative [Nitrosococcus oceani AFC27...	182.0	[0..1]	[231..1]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIAVTTTDP TNTGVSTTSS SSLTGSNAAD LQSSFLTLLV AQLKNQDPTN PMENNELTSQ  60
   61 LAQISTVSGI EKLNTTLGSI SGQIDNSQSL QASNLI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	21.657577
Match:	PF03963.5
Description:	No description for PF03963.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [97-231]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GHGVMIPGTT VLAGTGSEEG AVTTTTPFGV ELQQAADKVT ATITDKNGAV VRTIDIGELT  60
   61 AGVHSFTWDG TLTDGSTAPN GSYNVAISAS NGGTQLVAQP LQFALVQGVI RGNSGNTLDL 120
  121 GTYGTTTLDE VRQII

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.045757
Match:	1xf1A
Description:	Structure of C5a peptidase- a key virulence factor from Streptococcus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits