YRC Public Data Repository - Protein Structure Prediction

Protein:	FIMZ_ECOLI
Organism:	Escherichia coli
Length:	210 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FIMZ_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|51855517, gi\|... - gi\|51891828\|ref\|YP_074519.1\| two-component response regulator [Symbiobacterium thermophilum IAM 1486...	182.0	[0..1]	[209..1]
gi\|98660596 - gi\|98660596\|dbj\|GAA02177.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	180.0	[0..1]	[209..3]
gi\|83588943, gi\|... - gi\|83588943\|ref\|YP_428952.1\| two component transcriptional regulator [Moorella thermoacetica ATCC 39...	178.0	[0..4]	[209..5]
gi\|114566483, gi... - gi\|114566483\|ref\|YP_753637.1\| response regulator receiver protein [Syntrophomonas wolfei subsp. wolf...	178.0	[0..1]	[209..1]
gi\|68235104, gi\|... - gi\|68235104\|ref\|ZP_00574141.1\| Response regulator receiver:Transcriptional regulatory protein, C ter...	176.0	[0..1]	[210..259]
gi\|111220170, gi... - gi\|111220170\|ref\|YP_710964.1\| putative two-component system response regulator (partial match) [Fran...	176.0	[0..1]	[210..16]
gi\|86739037, gi\|... - gi\|86739037\|ref\|YP_479437.1\| two component transcriptional regulator [Frankia sp. CcI3], gi\|86565899...	174.0	[0..1]	[210..156]
gi\|82945310, gi\|... - gi\|83310469\|ref\|YP_420733.1\| response regulator [Magnetospirillum magneticum AMB-1], gi\|82945310\|dbj...	174.0	[0..2]	[209..10]
gi\|29830959, gi\|... - gi\|29830959\|ref\|NP_825593.1\| two-component system response regulator [Streptomyces avermitilis MA-46...	174.0	[0..5]	[209..22]

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Predicted Domain #1

Region A:
Residues: [1-210]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPTSVIIMD THPIIRMSIE VLLQKNSELQ IVLKTDDYRI TIDYLRTRPV DLIIMDIDLP  60
   61 GTDGFTFLKR IKQIQSTVKV LFLSSKSECF YAGRAIQAGA NGFVSKCNDQ NDIFHAVQMI 120
  121 LSGYTFFPSE TLNYIKSNKC STNSSTVTVL SNREVTILRY LVSGLSNKEI ADKLLLSNKT 180
  181 VSAHKSNIYG KLGLHSIVEL IDYAKLYELI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.09691
Match:	2oqrA
Description:	No description for 2oqrA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits