YRC Public Data Repository - Protein Structure Prediction

Protein:	FIMH_ECOLI
Organism:	Escherichia coli
Length:	300 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FIMH_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|11120562 - gi\|11120562\|gb\|AAG30925.1\|AF306535_1 FimH precursor [Escherichia coli]	239.0	[0..1]	[300..1]
gi\|187734155, gi... - gi\|75179380\|ref\|ZP_00699384.1\| hypothetical protein SboyB_01000485 [Shigella boydii BS512], gi\|18773...	239.0	[0..1]	[300..1]
gi\|115515752, gi... - gi\|117626628\|ref\|YP_859951.1\| type 1 fimbiral adhesin FimH [Escherichia coli APEC O1], gi\|115515752\|... gi\|110644762, gi... - gi\|110644762\|ref\|YP_672492.1\| FimH protein precursor [Escherichia coli 536], gi\|110346354\|gb\|ABG7259...	239.0	[0..1]	[300..4]
gi\|75515503 - gi\|75515503\|ref\|ZP_00737660.1\| hypothetical protein Ecol5_01000606 [Escherichia coli 53638] gi\|124498368, gi... - gi\|124531802\|ref\|ZP_01701931.1\| Fimbrial protein [Escherichia coli B], gi\|124498368\|gb\|EAY45884.1\| F...	238.0	[0..1]	[300..4]

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Predicted Domain #1

Region A:
Residues: [1-300]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRVITLFAV LLMGWSVNAW SFACKTANGT AIPIGGGSAN VYVNLAPVVN VGQNLVVDLS  60
   61 TQIFCHNDYP ETITDYVTLQ RGSAYGGVLS NFSGTVKYSG SSYPFPTTSE TPRVVYNSRT 120
  121 DKPWPVALYL TPVSSAGGVA IKAGSLIAVL ILRQTNNYNS DDFQFVWNIY ANNDVVVPTG 180
  181 GCDVSARDVT VTLPDYPGSV PIPLTVYCAK SQNLGYYLSG TTADAGNSIF TNTASFSPAQ 240
  241 GVGVQLTRNG TIIPANNTVS LGAVGTSAVS LGLTANYART GGQVTAGNVQ SIIGVTFVYQ 300
  301

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.0
Match:	1klfB
Description:	Mannose-specific adhesin FimH
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits