YRC Public Data Repository - Protein Structure Prediction

Protein:	FIMF_ECOLI
Organism:	Escherichia coli
Length:	176 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FIMF_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|12519325, gi\|... - gi\|15804893\|ref\|NP_290934.1\| fimbrial morphology [Escherichia coli O157:H7 EDL933], gi\|12519325\|gb\|A... gi\|208820023, gi... - gi\|208820023\|ref\|ZP_03260343.1\| fimbrial protein FimF [Escherichia coli O157:H7 str. EC4042], gi\|208... gi\|15834531, gi\|... - gi\|15834531\|ref\|NP_313304.1\| FimF [Escherichia coli O157:H7 str. Sakai], gi\|13364755\|dbj\|BAB38700.1\|... gi\|209400351, gi... - gi\|209400351\|ref\|YP_002273843.1\| fimbrial protein FimF [Escherichia coli O157:H7 str. EC4115], gi\|20... gi\|217321839, gi... - gi\|217325618\|ref\|ZP_03441702.1\| fimbrial protein FimF [Escherichia coli O157:H7 str. TW14588], gi\|21... gi\|192930717, gi... - gi\|193063730\|ref\|ZP_03044818.1\| fimbrial protein FimF [Escherichia coli E22], gi\|192930717\|gb\|EDV833... gi\|195937326 - gi\|195937326\|ref\|ZP_03082708.1\| FimF [Escherichia coli O157:H7 str. EC4024] gi\|208728054, gi... - gi\|208808253\|ref\|ZP_03250590.1\| fimbrial protein FimF [Escherichia coli O157:H7 str. EC4206], gi\|208... gi\|208813917, gi... - gi\|208813917\|ref\|ZP_03255246.1\| fimbrial protein FimF [Escherichia coli O157:H7 str. EC4045], gi\|208... gi\|168766593, gi... - gi\|189364316\|gb\|EDU82735.1\| fimbrial protein FimF [Escherichia coli O157:H7 str. EC4486], gi\|1687665... gi\|168773977, gi... - gi\|187770190\|gb\|EDU34034.1\| fimbrial protein FimF [Escherichia coli O157:H7 str. EC4196], gi\|1687739... gi\|189000781, gi... - gi\|189000781\|gb\|EDU69767.1\| fimbrial protein FimF [Escherichia coli O157:H7 str. EC4076], gi\|1687816... gi\|189379600, gi... - gi\|189379600\|gb\|EDU98016.1\| fimbrial protein FimF [Escherichia coli O157:H7 str. EC508], gi\|16879788... gi\|188016187, gi... - gi\|188016187\|gb\|EDU54309.1\| fimbrial protein FimF [Escherichia coli O157:H7 str. EC4113], gi\|1687495... gi\|189357783, gi... - gi\|189357783\|gb\|EDU76202.1\| fimbrial protein FimF [Escherichia coli O157:H7 str. EC4401], gi\|1687548... gi\|189368919, gi... - gi\|189368919\|gb\|EDU87335.1\| fimbrial protein FimF [Escherichia coli O157:H7 str. EC4501], gi\|1687605... gi\|15834531, gi\|... - gi\|15834531\|ref\|NP_313304.1\| FimF [Escherichia coli O157:H7], gi\|13364755\|dbj\|BAB38700.1\| fimbrial m... gi\|209749320, gi... - pir\|\|H86129 fimbrial morphology [imported] - Escherichia coli (strain O157:H7, substrain EDL933), p... gi\|254796320, gi... - gi\|254796320\|ref\|YP_003081157.1\| fimbrial morphology [Escherichia coli O157:H7 str. TW14359], gi\|254...	151.0	[0..1]	[176..1]
gi\|41464 - gi\|41464\|emb\|CAA29154.1\| unnamed protein product [Escherichia coli]	151.0	[0..1]	[176..1]
gi\|115515750, gi... - gi\|117626626\|ref\|YP_859949.1\| FimF protein precursor [Escherichia coli APEC O1], gi\|115515750\|gb\|ABJ... gi\|26111637, gi\|... - gi\|26251205\|ref\|NP_757245.1\| FimF protein precursor [Escherichia coli CFT073], gi\|26111637\|gb\|AAN838...	151.0	[0..1]	[176..2]
gi\|10946259 - gi\|10946259\|gb\|AAG24828.1\|AF288195_1 type 1 fimbrial minor subunit FimF [Escherichia coli] gi\|191170636, gi... - gi\|191170636\|ref\|ZP_03032188.1\| fimbrial protein FimF [Escherichia coli F11], gi\|190908860\|gb\|EDV684... gi\|110644760, gi... - gi\|110644760\|ref\|YP_672490.1\| FimF protein precursor [Escherichia coli 536], gi\|110346352\|gb\|ABG7258... gi\|10946259\|gb\|A... - type 1 fimbrial minor subunit FimF [Escherichia coli]	151.0	[0..1]	[176..1]
gi\|52420903, gi\|... - gi\|52420903\|emb\|CAH55782.1\| minor fimbrial subunit precursor [Escherichia coli], gi\|3286747\|emb\|CAA1... gi\|227838023, gi... - gi\|227885194\|ref\|ZP_04002999.1\| fimbrial protein FimF [Escherichia coli 83972], gi\|227838023\|gb\|EEJ4... gi\|215267714, gi... - gi\|215489642\|ref\|YP_002332073.1\| minor component of type 1 fimbriae [Escherichia coli O127:H6 str. E... gi\|170681901, gi... - gi\|170681901\|ref\|YP_001746756.1\| fimbrial protein FimF [Escherichia coli SMS-3-5], gi\|170519619\|gb\|A... gi\|91075537, gi\|... - gi\|91213963\|ref\|YP_543949.1\| type 1 fimbriae minor subunit precursor FimF [Escherichia coli UTI89], ...	151.0	[0..1]	[176..1]
gi\|82546664, gi\|... - gi\|82546664\|ref\|YP_410611.1\| fimbrial morphology [Shigella boydii Sb227], gi\|81248075\|gb\|ABB68783.1\|... gi\|218556849, gi... - gi\|218556849\|ref\|YP_002389763.1\| minor component of type 1 fimbriae [Escherichia coli IAI1], gi\|2183...	149.0	[0..1]	[176..1]
gi\|56384092, gi\|... - gi\|56480541\|ref\|NP_709916.2\| minor fimbrial subunit, precursor polypeptide [Shigella flexneri 2a str... gi\|30043688, gi\|... - gi\|30065426\|ref\|NP_839597.1\| minor fimbrial subunit, precursor polypeptide [Shigella flexneri 2a str... gi\|110807977, gi... - gi\|110807977\|ref\|YP_691497.1\| minor fimbrial subunit, precursor polypeptide [Shigella flexneri 5 str...	149.0	[0..1]	[176..1]
gi\|68304561 - gi\|68304561\|gb\|AAY89859.1\| FimF precursor [Klebsiella pneumoniae]	148.0	[0..1]	[176..1]
gi\|117626623, gi... - gi\|117626623\|ref\|YP_859946.1\| FimI fimbrial protein [Escherichia coli APEC O1], gi\|115515747\|gb\|ABJ0...	146.0	[0..1]	[176..42]

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Predicted Domain #1

Region A:
Residues: [1-176]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNKPFYLLC AFLWLAVSHA LAADSTITIR GYVRDNGCSV AAESTNFTVD LMENAAKQFN  60
   61 NIGATTPVVP FRILLSPCGN AVSAVKVGFT GVADSHNANL LALENTVSAA SGLGIQLLNE 120
  121 QQNQIPLNAP SSALSWTTLT PGKPNTLNFY ARLMATQVPV TAGHINATAT FTLEYQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.0
Match:	1pdkB
Description:	PapK pilus subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits