YRC Public Data Repository - Protein Structure Prediction

Protein:	FIMB_ECOLI
Organism:	Escherichia coli
Length:	200 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FIMB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|90961911, gi\|... - gi\|90961911\|ref\|YP_535827.1\| integrase/recombinase XerD/RipX family [Lactobacillus salivarius UCC118...	197.0	[0..3]	[195..103]
gi\|116097246, gi... - gi\|116618399\|ref\|YP_818770.1\| tyrosine recombinase XerD subunit [Leuconostoc mesenteroides subsp. me...	196.0	[0..2]	[195..102]
gi\|51892959, gi\|... - gi\|51892959\|ref\|YP_075650.1\| recombinase [Symbiobacterium thermophilum IAM 14863], gi\|51856648\|dbj\|B...	194.0	[0..3]	[195..100]
gi\|78610281, gi\|... - gi\|81428639\|ref\|YP_395639.1\| site-specific DNA tyrosine recombinase, XerD [Lactobacillus sakei subsp...	194.0	[0..3]	[195..100]
gi\|116095121, gi... - gi\|116629539\|ref\|YP_814711.1\| integrase [Lactobacillus gasseri ATCC 33323], gi\|116095121\|gb\|ABJ60273... gi\|238834835, gi... - gi\|238852689\|ref\|ZP_04643099.1\| tyrosine recombinase XerD [Lactobacillus gasseri 202-4], gi\|23883483...	193.0	[0..3]	[195..106]
gi\|76874383, gi\|... - gi\|77359472\|ref\|YP_339047.1\| site-specific tyrosine recombinase XerD [Pseudoalteromonas haloplanktis...	193.0	[0..3]	[195..115]
XERD_STAEQ - Tyrosine recombinase XerD OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=xerD PE=3 SV=...	192.0	[0..3]	[195..101]
XERD_STAEP - (Q7ZAJ2) Tyrosine recombinase xerD gi\|251805594, gi... - gi\|251810914\|ref\|ZP_04825387.1\| integrase/recombinase XerD [Staphylococcus epidermidis BCM-HMP0060],... XERD_STAES - Tyrosine recombinase XerD OS=Staphylococcus epidermidis (strain ATCC 12228) GN=xerD PE=3 SV=1	192.0	[0..3]	[195..101]

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Predicted Domain #1

Region A:
Residues: [1-200]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNKADNKKR NFLTHSEIES LLKAANTGPH AARNYCLTLL CFIHGFRASE ICRLRISDID  60
   61 LKAKCIYIHR LKKGFSTTHP LLNKEVQALK NWLSIRTSYP HAESEWVFLS RKGNPLSRQQ 120
  121 FYHIISTSGG NAGLSLEIHP HMLRHSCGFA LANMGIDTRL IQDYLGHRNI RHTVWYTASN 180
  181 AGRFYGIWDR ARGRQRHAVL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.30103
Match:	1a0pA
Description:	SITE-SPECIFIC RECOMBINASE, XERD
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.32470898553998	bayes_pls_golite062009
site-specific recombinase activity	0.63725674285826	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: