YRC Public Data Repository - Protein Structure Prediction

Protein:	FEPD_ECOLI
Organism:	Escherichia coli
Length:	334 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FEPD_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|67987421, gi\|... - gi\|69285730\|ref\|ZP_00617069.1\| transport system permease protein [Kineococcus radiotolerans SRS30216...	222.0	[0..31]	[330..580]
gi\|83375265, gi\|... - gi\|83375265\|ref\|ZP_00920028.1\| similar to ABC-type Fe3+-siderophore transport system permease compon...	220.0	[0..23]	[334..440]
gi\|20089997, gi\|... - gi\|20089997\|ref\|NP_616072.1\| iron ABC transporter, permease protein [Methanosarcina acetivorans C2A]...	219.0	[0..8]	[331..15]
gi\|76167036, gi\|... - gi\|76257950\|ref\|ZP_00765607.1\| transport system permease protein [Chloroflexus aurantiacus J-10-fl],...	216.0	[0..1]	[332..57]
gi\|68185993, gi\|... - gi\|91773082\|ref\|YP_565774.1\| ABC Fe3+-siderophore transporter, inner membrane subunit [Methanococcoi...	215.0	[0..8]	[332..37]
gi\|72395868, gi\|... - gi\|73668706\|ref\|YP_304721.1\| iron ABC transporter, permease protein [Methanosarcina barkeri str. Fus...	211.0	[0..8]	[331..22]
gi\|219992178, gi... - gi\|89211194\|ref\|ZP_01189569.1\| transport system permease protein [Halothermothrix orenii H 168], gi\|...	211.0	[0..9]	[330..7]
FHUB_BACSU - Iron(3+)-hydroxamate import system permease protein fhuB OS=Bacillus subtilis GN=fhuB PE=3 SV=1 FHUB_BACSU - Iron(3+)-hydroxamate import system permease protein FhuB OS=Bacillus subtilis (strain 168) GN=fhuB P...	209.0	[0..3]	[332..53]
gi\|4757572 - gi\|4757572\|gb\|AAD29085.1\|AF082879_1 FepD [Yersinia enterocolitica]	209.0	[0..6]	[331..26]
gi\|45358745, gi\|... - gi\|45358745\|ref\|NP_988302.1\| transport system permease protein [Methanococcus maripaludis S2], gi\|45...	209.0	[0..3]	[331..9]

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Predicted Domain #1

Region A:
Residues: [1-334]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGSVAVTRA IAVPGLLLLL IIATALSLLI GAKSLPASVV LEAFSGTCQS ADCTIVLDAR  60
   61 LPRTLAGLLA GGALGLAGAL MQTLTRNPLA DPGLLGVNAG ASFAIVLGAA LFGYSSAQEQ 120
  121 LAMAFAGALV ASLIVAFTGS QGGGQLSPVR LTLAGVALAA VLEGLTSGIA LLNPDVYDQL 180
  181 RFWQAGSLDI RNLHTLKVVL IPVLIAGATA LLLSRALNSL SLGSDTATAL GSRVARTQLI 240
  241 GLLAITVLCG SATAIVGPIA FIGLMMPHMA RWLVGADHRW SLPVTLLATP ALLLFADIIG 300
  301 RVIVPGELRV SVVSAFIGAP VLIFLVRRKT RGGA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.69897
Match:	2nq2A
Description:	No description for 2nq2A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits