YRC Public Data Repository - Protein Structure Prediction

Protein:	FECD_ECOLI
Organism:	Escherichia coli
Length:	318 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FECD_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|67987421, gi\|... - gi\|69285730\|ref\|ZP_00617069.1\| transport system permease protein [Kineococcus radiotolerans SRS30216...	221.0	[0..24]	[318..580]
gi\|76167036, gi\|... - gi\|76257950\|ref\|ZP_00765607.1\| transport system permease protein [Chloroflexus aurantiacus J-10-fl],...	213.0	[0..5]	[318..68]
gi\|83375265, gi\|... - gi\|83375265\|ref\|ZP_00920028.1\| similar to ABC-type Fe3+-siderophore transport system permease compon...	212.0	[0..16]	[316..440]
gi\|68185993, gi\|... - gi\|91773082\|ref\|YP_565774.1\| ABC Fe3+-siderophore transporter, inner membrane subunit [Methanococcoi...	209.0	[0..2]	[318..38]
gi\|69150802, gi\|... - gi\|69938052\|ref\|ZP_00632603.1\| transport system permease protein [Paracoccus denitrificans PD1222], ...	207.0	[0..23]	[318..300]
gi\|219992178, gi... - gi\|89211194\|ref\|ZP_01189569.1\| transport system permease protein [Halothermothrix orenii H 168], gi\|...	204.0	[0..2]	[318..7]
gi\|20089997, gi\|... - gi\|20089997\|ref\|NP_616072.1\| iron ABC transporter, permease protein [Methanosarcina acetivorans C2A]...	201.0	[0..2]	[317..16]
gi\|45358745, gi\|... - gi\|45358745\|ref\|NP_988302.1\| transport system permease protein [Methanococcus maripaludis S2], gi\|45...	201.0	[0..2]	[317..15]
gi\|214034358, gi... - gi\|254479701\|ref\|ZP_05092994.1\| ABC transporter, FeCT family, permease protein [Carboxydibrachium pa... gi\|20808280 - gi\|20808280\|ref\|NP_623451.1\| ABC-type cobalamin/Fe3+-siderophores transport systems, permease compon... gi\|20516881, gi\|... - gi\|20808280\|ref\|NP_623451.1\| ABC-type cobalamin/Fe3+-siderophores transport systems, permease compon...	201.0	[0..2]	[317..20]
Y087_METJA - Putative ABC transporter permease protein MJ0087 OS=Methanocaldococcus jannaschii (strain ATCC 43067... Y087_METJA - Putative ABC transporter permease protein MJ0087 OS=Methanocaldococcus jannaschii GN=MJ0087 PE=3 SV=...	200.0	[0..2]	[317..14]

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Predicted Domain #1

Region A:
Residues: [1-318]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIALVIFIT LALAGCALLS LHMGVIPVPW RALLTDWQAG HEHYYVLMEY RLPRLLLALF  60
   61 VGAALAVAGV LIQGIVRNPL ASPDILGVNH AASLASVGAL LLMPSLPVMV LPLLAFAGGM 120
  121 AGLILLKMLA KTHQPMKLAL TGVALSACWA SLTDYLMLSR PQDVNNALLW LTGSLWGRDW 180
  181 SFVKIAIPLM ILFLPLSLSF CRDLDLLALG DARATTLGVS VPHTRFWALL LAVAMTSTGV 240
  241 AACGPISFIG LVVPHMMRSI TGGRHRRLLP VSALTGALLL VVADLLARII HPPLELPVGV 300
  301 LTAIIGAPWF VWLLVRMR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.69897
Match:	2nq2A
Description:	No description for 2nq2A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits