YRC Public Data Repository - Protein Structure Prediction

Protein:	FECC_ECOLI
Organism:	Escherichia coli
Length:	332 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FECC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|67987421, gi\|... - gi\|69285730\|ref\|ZP_00617069.1\| transport system permease protein [Kineococcus radiotolerans SRS30216...	223.0	[0..30]	[331..580]
gi\|68185993, gi\|... - gi\|91773082\|ref\|YP_565774.1\| ABC Fe3+-siderophore transporter, inner membrane subunit [Methanococcoi...	212.0	[0..2]	[331..32]
gi\|76167036, gi\|... - gi\|76257950\|ref\|ZP_00765607.1\| transport system permease protein [Chloroflexus aurantiacus J-10-fl],...	210.0	[0..3]	[331..60]
gi\|20089997, gi\|... - gi\|20089997\|ref\|NP_616072.1\| iron ABC transporter, permease protein [Methanosarcina acetivorans C2A]...	210.0	[0..5]	[331..13]
gi\|219992178, gi... - gi\|89211194\|ref\|ZP_01189569.1\| transport system permease protein [Halothermothrix orenii H 168], gi\|...	209.0	[0..3]	[331..2]
gi\|83375265, gi\|... - gi\|83375265\|ref\|ZP_00920028.1\| similar to ABC-type Fe3+-siderophore transport system permease compon...	208.0	[0..22]	[330..440]
FHUB_BACSU - Iron(3+)-hydroxamate import system permease protein fhuB OS=Bacillus subtilis GN=fhuB PE=3 SV=1 FHUB_BACSU - Iron(3+)-hydroxamate import system permease protein FhuB OS=Bacillus subtilis (strain 168) GN=fhuB P...	208.0	[0..2]	[330..53]
gi\|69150802, gi\|... - gi\|69938052\|ref\|ZP_00632603.1\| transport system permease protein [Paracoccus denitrificans PD1222], ...	206.0	[0..29]	[330..300]
gi\|45358745, gi\|... - gi\|45358745\|ref\|NP_988302.1\| transport system permease protein [Methanococcus maripaludis S2], gi\|45...	202.0	[0..2]	[330..9]
gi\|214034358, gi... - gi\|254479701\|ref\|ZP_05092994.1\| ABC transporter, FeCT family, permease protein [Carboxydibrachium pa... gi\|20808280 - gi\|20808280\|ref\|NP_623451.1\| ABC-type cobalamin/Fe3+-siderophores transport systems, permease compon... gi\|20516881, gi\|... - gi\|20808280\|ref\|NP_623451.1\| ABC-type cobalamin/Fe3+-siderophores transport systems, permease compon...	202.0	[0..2]	[331..14]

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Predicted Domain #1

Region A:
Residues: [1-332]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAIKHPVLL WGLPVAALII IFWLSLFCYS AIPVSGADAT RALLPGHTPT LPEALVQNLR  60
   61 LPRSLVAVLI GASLALAGTL LQTLTHNPMA SPSLLGINSG AALAMALTSA LSPTPIAGYS 120
  121 LSFIAACGGG VSWLLVMTAG GGFRHTHDRN KLILAGIALS AFCMGLTRIT LLLAEDHAYG 180
  181 IFYWLAGGVS HARWQDVWQL LPVVVTAVPV VLLLANQLNL LNLSDSTAHT LGVNLTRLRL 240
  241 VINMLVLLLV GACVSVAGPV AFIGLLVPHL ARFWAGFDQR NVLPVSMLLG ATLMLLADVL 300
  301 ARALAFPGDL PAGAVLALIG SPCFVWLVRR RG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.69897
Match:	2nq2A
Description:	No description for 2nq2A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits