YRC Public Data Repository - Protein Structure Prediction

Protein:	FCTA_ECOLI
Organism:	Escherichia coli
Length:	416 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FCTA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|158140111, gi... - gi\|158319912\|ref\|YP_001512419.1\| Formyl-CoA transferase [Alkaliphilus oremlandii OhILAs], gi\|1581401...	508.0	[0..1]	[415..1]
gi\|145047488, gi... - gi\|145589082\|ref\|YP_001155679.1\| Formyl-CoA transferase [Polynucleobacter necessarius subsp. asymbio...	485.0	[0..3]	[416..23]
gi\|119186953, gi... - gi\|90302869\|gb\|EAS32500.1\| hypothetical protein CIMG_03524 [Coccidioides immitis RS], gi\|119186953\|r...	484.0	[0..2]	[416..40]
gi\|94314067, gi\|... - gi\|94314067\|ref\|YP_587276.1\| L-carnitine dehydratase/bile acid-inducible protein F [Ralstonia metall...	484.0	[0..1]	[416..1]
gi\|32414209, gi\|... - gi\|32414209\|ref\|XP_327584.1\| hypothetical protein [Neurospora crassa], gi\|28923749\|gb\|EAA32916.1\| hy... gi\|85068273 - gi\|85068273\|ref\|XP_962152.1\| hypothetical protein NCU07298 [Neurospora crassa OR74A]	483.0	[0..2]	[416..38]
gi\|77639437, gi\|... - gi\|77684754\|ref\|ZP_00800175.1\| L-carnitine dehydratase/bile acid-inducible protein F [Alkaliphilus m...	482.0	[0..1]	[415..1]
gi\|34105222, gi\|... - gi\|34499372\|ref\|NP_903587.1\| L-carnitine dehydrogenase-like protein [Chromobacterium violaceum ATCC ...	482.0	[0..1]	[416..1]
gi\|73540552, gi\|... - gi\|73540552\|ref\|YP_295072.1\| L-carnitine dehydratase/bile acid-inducible protein F [Ralstonia eutrop...	481.0	[0..3]	[416..29]
gi\|23014759 - gi\|23014759\|ref\|ZP_00054560.1\| COG1804: Predicted acyl-CoA transferases/carnitine dehydratase [Magne...	481.0	[0..1]	[416..1]
gi\|159130848 - gi\|159130848\|gb\|EDP55961.1\| CAIB/BAIF family enzyme [Aspergillus fumigatus A1163] gi\|66848006, gi\|... - gi\|70991050\|ref\|XP_750374.1\| CAIB/BAIF family enzyme [Aspergillus fumigatus Af293], gi\|66848006\|gb\|E...	480.0	[0..2]	[416..32]

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Predicted Domain #1

Region A:
Residues: [1-416]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTPLQGIKV LDFTGVQSGP SCTQMLAWFG ADVIKIERPG VGDVTRHQLR DIPDIDALYF  60
   61 TMLNSNKRSI ELNTKTAEGK EVMEKLIREA DILVENFHPG AIDHMGFTWE HIQEINPRLI 120
  121 FGSIKGFDEC SPYVNVKAYE NVAQAAGGAA STTGFWDGPP LVSAAALGDS NTGMHLLIGL 180
  181 LAALLHREKT GRGQRVTMSM QDAVLNLCRV KLRDQQRLDK LGYLEEYPQY PNGTFGDAVP 240
  241 RGGNAGGGGQ PGWILKCKGW ETDPNAYIYF TIQEQNWENT CKAIGKPEWI TDPAYSTAHA 300
  301 RQPHIFDIFA EIEKYTVTID KHEAVAYLTQ FDIPCAPVLS MKEISLDPSL RQSGSVVEVE 360
  361 QPLRGKYLTV GCPMKFSAFT PDIKAAPLLG EHTAAVLQEL GYSDDEIAAM KQNHAI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	119.0
Match:	1pt5A
Description:	Crystal structure of gene yfdW of E. coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
alpha-methylacyl-CoA racemase activity	2.05221714417621	bayes_pls_golite062009
catalytic activity	0.613824351162579	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: