YRC Public Data Repository - Protein Structure Prediction

Protein:	EXUR_ECOLI
Organism:	Escherichia coli
Length:	258 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EXUR_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|170518081, gi... - gi\|170680363\|ref\|YP_001745369.1\| exu regulon transcriptional regulator [Escherichia coli SMS-3-5], g... gi\|110643343, gi... - gi\|110643343\|ref\|YP_671073.1\| DNA-binding transcriptional repressor ExuR [Escherichia coli 536], gi\|...	193.0	[0..1]	[258..1]
gi\|229705375, gi... - gi\|229837252\|ref\|ZP_04457415.1\| exu regulon transcriptional regulator [Yersinia pestis Pestoides A],... gi\|229696833, gi... - gi\|229840467\|ref\|ZP_04460626.1\| exu regulon transcriptional regulator [Yersinia pestis biovar Orient... gi\|229842991, gi... - gi\|229842991\|ref\|ZP_04463141.1\| exu regulon transcriptional regulator [Yersinia pestis biovar Orient... gi\|167051620, gi... - gi\|167399116\|ref\|ZP_02304640.1\| transcriptional regulator, GntR family [Yersinia pestis biovar Antiq... gi\|166212155, gi... - gi\|166212155\|ref\|ZP_02238190.1\| transcriptional regulator, GntR family [Yersinia pestis biovar Antiq... gi\|150260388, gi... - gi\|150260388\|ref\|ZP_01917116.1\| exu regulon transcriptional regulator [Yersinia pestis CA88-4125], g... gi\|167426381, gi... - gi\|167426381\|ref\|ZP_02318134.1\| transcriptional regulator, GntR family [Yersinia pestis biovar Media... gi\|145597677, gi... - gi\|145597677\|ref\|YP_001161753.1\| DNA-binding transcriptional repressor ExuR [Yersinia pestis Pestoid... gi\|166960050, gi... - gi\|167421913\|ref\|ZP_02313666.1\| transcriptional regulator, GntR family [Yersinia pestis biovar Orien... gi\|169749337, gi... - gi\|170022803\|ref\|YP_001719308.1\| DNA-binding transcriptional repressor ExuR [Yersinia pseudotubercul... gi\|167469740 - gi\|167469740\|ref\|ZP_02334444.1\| transcriptional regulator, GntR family protein [Yersinia pestis FV-1... Q665N6\|Q665N6_YERPS - Exu regulon transcriptional regulator - Yersinia pseudotuberculosis gi\|186699989, gi... - gi\|186896963\|ref\|YP_001874075.1\| DNA-binding transcriptional repressor ExuR [Yersinia pseudotubercul... gi\|161484750 - gi\|161484750\|ref\|NP_670899.2\| DNA-binding transcriptional repressor ExuR [Yersinia pestis KIM] gi\|51597772, gi\|... - gi\|51597772\|ref\|YP_071963.1\| DNA-binding transcriptional repressor ExuR [Yersinia pseudotuberculosis... gi\|165919714, gi... - gi\|165928272\|ref\|ZP_02224104.1\| transcriptional regulator, GntR family [Yersinia pestis biovar Orien... gi\|25325764 - pir\|\|AF0071 exu regulon transcription regulator exuR [imported] - Yersinia pestis (strain CO92) gi\|161511341 - gi\|161511341\|ref\|NP_994201.2\| DNA-binding transcriptional repressor ExuR [Yersinia pestis biovar Mic... gi\|165992117, gi... - gi\|166008778\|ref\|ZP_02229676.1\| transcriptional regulator, GntR family [Yersinia pestis biovar Antiq... gi\|115346384, gi... - gi\|218927773\|ref\|YP_002345648.1\| DNA-binding transcriptional repressor ExuR [Yersinia pestis CO92], ... gi\|165914168, gi... - gi\|165937756\|ref\|ZP_02226317.1\| transcriptional regulator, GntR family [Yersinia pestis biovar Orien... gi\|77635717, gi\|... - gi\|77635717\|ref\|ZP_00797798.1\| COG2186: Transcriptional regulators [Yersinia pestis Angola], gi\|1624... gi\|153950841, gi... - gi\|77630481\|ref\|ZP_00793067.1\| COG2186: Transcriptional regulators [Yersinia pseudotuberculosis IP 3... gi\|108809203, gi... - gi\|108809203\|ref\|YP_653119.1\| DNA-binding transcriptional repressor ExuR [Yersinia pestis Antiqua], ... gi\|108774258, gi... - gi\|229900802\|ref\|ZP_04515926.1\| exu regulon transcriptional regulator [Yersinia pestis Nepal516], gi...	193.0	[0..1]	[258..1]
gi\|82778421, gi\|... - gi\|82778421\|ref\|YP_404770.1\| negative regulator of exu regulon, exuT, uxaAC, and uxuB [Shigella dyse...	193.0	[0..1]	[258..6]
gi\|77976510, gi\|... - gi\|77976510\|ref\|ZP_00831995.1\| COG2186: Transcriptional regulators [Yersinia intermedia ATCC 29909],...	192.0	[0..1]	[257..1]
gi\|75178748, gi\|... - gi\|75178748\|ref\|ZP_00698784.1\| COG2186: Transcriptional regulators [Shigella boydii BS512], gi\|18773...	192.0	[0..1]	[258..1]
gi\|169753579, gi... - gi\|170018651\|ref\|YP_001723605.1\| DNA-binding transcriptional repressor ExuR [Escherichia coli ATCC 8... gi\|194422250, gi... - gi\|83585738\|ref\|ZP_00924379.1\| COG2186: Transcriptional regulators [Escherichia coli 101-1], gi\|1944... gi\|242378643, gi... - gi\|251786370\|ref\|YP_003000674.1\| hypothetical protein B21_02914 [Escherichia coli BL21], gi\|24237864... gi\|253974941, gi... - gi\|254163040\|ref\|YP_003046148.1\| DNA-binding transcriptional repressor [Escherichia coli B str. REL6... gi\|253979097, gi... - gi\|254289790\|ref\|YP_003055538.1\| DNA-binding transcriptional repressor [Escherichia coli BL21(DE3)],... gi\|124502096, gi... - gi\|124525992\|ref\|ZP_01697997.1\| GntR domain protein [Escherichia coli B], gi\|124502096\|gb\|EAY49556.1...	192.0	[0..1]	[258..1]
gi\|161486115 - gi\|161486115\|ref\|NP_755723.2\| DNA-binding transcriptional repressor ExuR [Escherichia coli CFT073] gi\|162138371 - gi\|162138371\|ref\|YP_542509.2\| DNA-binding transcriptional repressor ExuR [Escherichia coli UTI89] gi\|191172213, gi... - gi\|75240871\|ref\|ZP_00724769.1\| COG2186: Transcriptional regulators [Escherichia coli F11], gi\|191172... gi\|218706718, gi... - gi\|218706718\|ref\|YP_002414237.1\| DNA-binding transcriptional repressor ExuR [Escherichia coli UMN026... gi\|218560178, gi... - gi\|218560178\|ref\|YP_002393091.1\| DNA-binding transcriptional repressor ExuR [Escherichia coli S88], ... gi\|218691396, gi... - gi\|218691396\|ref\|YP_002399608.1\| DNA-binding transcriptional repressor ExuR [Escherichia coli ED1a],...	192.0	[0..1]	[258..1]
gi\|254038264, gi... - gi\|254038264\|ref\|ZP_04872322.1\| exu regulon regulator [Escherichia sp. 1_1_43], gi\|226839888\|gb\|EEH7... gi\|15833230, gi\|... - gi\|15833230\|ref\|NP_312003.1\| negative regulator of exu regulon [Escherichia coli O157:H7], gi\|133634... gi\|25325756, gi\|... - gi\|7449871\|pir\|\|C65098 exu regulon regulator - Escherichia coli (strain K-12), gi\|606035\|gb\|AAA57898... gi\|606035\|gb\|AAA... - ORF_o263 [Escherichia coli] gi\|15803635, gi\|... - gi\|15803635\|ref\|NP_289668.1\| negative regulator of exu regulon, exuT, uxaAC, and uxuB [Escherichia c... gi\|1789480, gi\|1... - gb\|AAC76129.1\| negative regulator of exu regulon, exuT, uxaAC, and uxuB; transcriptional repressor f... gi\|15833230, gi\|... - gi\|15833230\|ref\|NP_312003.1\| negative regulator of exu regulon [Escherichia coli O157:H7 str. Sakai]...	192.0	[0..1]	[258..6]
gi\|26110111, gi\|... - gi\|26249683\|ref\|NP_755723.1\| Exu regulon transcriptional regulator [Escherichia coli CFT073], gi\|261... gi\|117625402, gi... - gi\|117625402\|ref\|YP_858725.1\| DNA-binding transcriptional repressor ExuR [Escherichia coli APEC O1],... gi\|91074097, gi\|... - gi\|91212523\|ref\|YP_542509.1\| exu regulon transcriptional regulator [Escherichia coli UTI89], gi\|9107... gi\|227887819, gi... - gi\|227887819\|ref\|ZP_04005624.1\| DNA-binding transcriptional repressor ExuR [Escherichia coli 83972],... gi\|237706145, gi... - gi\|237706145\|ref\|ZP_04536626.1\| exu regulon transcriptional regulator [Escherichia sp. 3_2_53FAA], g...	192.0	[0..1]	[258..6]
gi\|22127476, gi\|... - gi\|22127476\|ref\|NP_670899.1\| negative regulator of exu regulon, exuT, uxaAC, and uxuB [Yersinia pest... gi\|45437528, gi\|... - gi\|45442662\|ref\|NP_994201.1\| exu regulon transcriptional regulator [Yersinia pestis biovar Microtus ...	191.0	[0..1]	[258..29]

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Predicted Domain #1

Region A:
Residues: [1-258]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEITEPRRLY QQLAADLKER IEQGVYLVGD KLPAERFIAD EKNVSRTVVR EAIIMLEVEG  60
   61 YVEVRKGSGI HVVSNQPRHQ QAADNNMEFA NYGPFELLQA RQLIESNIAE FAATQVTKQD 120
  121 IMKLMAIQEQ ARGEQCFRDS EWDLQFHIQV ALATQNSALA AIVEKMWTQR SHNPYWKKLH 180
  181 EHIDSRTVDN WCDDHDQILK ALIRKDPHAA KLAMWQHLEN TKIMLFNETS DDFEFNADRY 240
  241 LFAENPVVHL DTATSGSK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.39794
Match:	2di3A
Description:	No description for 2di3A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits