YRC Public Data Repository - Protein Structure Prediction

Protein:	DER_SYNY3, ENGA_...
Organism:	Synechocystis sp. PCC 6803
Length:	452 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DER_SYNY3, ENGA_....

Description	E-value	Query Range	Subject Range
DER_ANAVT - GTPase Der OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=der PE=3 SV=1	304.0	[0..1]	[452..1]
DER_NOSS1 - GTPase Der OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=der PE=3 SV=1 gi\|25328280 - pir\|\|AB1867 GTP binding protein [imported] - Nostoc sp. (strain PCC 7120)	303.0	[0..1]	[452..1]
DER_CHLSY - GTPase Der OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=der PE=3 SV=1 DER_CHLAA - GTPase Der OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=der PE=3 SV=1	301.0	[0..1]	[441..1]
DER_NOSP7 - GTPase Der OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=der PE=3 SV=1	299.0	[0..1]	[452..1]
DER_PELCD - GTPase Der OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=der PE=3 SV=1	299.0	[0..5]	[441..3]
DER_CALS4 - GTPase Der OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBR... ENGA_THETN - GTP-binding protein engA OS=Thermoanaerobacter tengcongensis GN=engA PE=3 SV=1	298.0	[0..1]	[437..1]
DER_ALKOO - GTPase Der OS=Alkaliphilus oremlandii (strain OhILAs) GN=der PE=3 SV=1	294.0	[0..1]	[441..1]
DER_MOOTA - GTPase Der OS=Moorella thermoacetica (strain ATCC 39073) GN=der PE=3 SV=1	292.0	[0..1]	[440..1]
DER_SYNP6 - GTPase Der OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=der PE=3 SV=1 DER_SYNE7 - GTPase Der OS=Synechococcus elongatus (strain PCC 7942) GN=der PE=3 SV=1	292.0	[0..1]	[452..1]
DER_CLOPE, ENGA_... - GTP-binding protein engA OS=Clostridium perfringens GN=engA PE=3 SV=1, GTPase Der OS=Clostridium per... DER_CLOP1 - GTPase Der OS=Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 / NCIMB 6125 / NCTC 82... DER_CLOPS - GTPase Der OS=Clostridium perfringens (strain SM101 / Type A) GN=der PE=3 SV=1 gi\|168217042, gi... - gi\|182380862\|gb\|EDT78341.1\| putative GTP-binding protein Era [Clostridium perfringens NCTC 8239], gi... DER_CLOPE - GTPase Der OS=Clostridium perfringens (strain 13 / Type A) GN=der PE=3 SV=1 gi\|169299237, gi... - gi\|169342731\|ref\|ZP_02863772.1\| putative GTP-binding protein Era [Clostridium perfringens C str. JGS... gi\|177908885, gi... - gi\|182625851\|ref\|ZP_02953617.1\| putative GTP-binding protein Era [Clostridium perfringens D str. JGS... gi\|170661368, gi... - gi\|170661368\|gb\|EDT14051.1\| putative GTP-binding protein Era [Clostridium perfringens E str. JGS1987... gi\|170711316, gi... - gi\|170711316\|gb\|EDT23498.1\| putative GTP-binding protein Era [Clostridium perfringens B str. ATCC 36... gi\|170714259, gi... - gi\|170714259\|gb\|EDT26441.1\| putative GTP-binding protein Era [Clostridium perfringens CPE str. F4969...	292.0	[0..1]	[438..1]

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Predicted Domain #1

Region A:
Residues: [1-452]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLPIVAIIG RPNVGKSTFV NRLAGNQQAI VHDQPGITRD RTYRPAFWRD RDFQVVDTGG  60
   61 LVFNDDSEFL PEIREQANLA LAEAKAAIFV VDGQQGPTAS DEEIAQWLRQ QSVPVILAVN 120
  121 KCESPDQGAI QAAEFWHLGL GEPYPMSAIH GSGTGDLLDA LLEYLPAPQE EPEEDEIKVA 180
  181 IVGRPNVGKS SLLNALTGEQ RAIVSPISGT TRDAIDMVVE RNGQKYRLID TAGIRRKKNV 240
  241 DYGAEFFGIN RAFKAIRRAD VVLFVLDVLD GVTEQDLKLA GRIIEDGRAV VLVINKWDAV 300
  301 EKDSYTIYEH REQLMARLYF MDWAEMIFVS AQTGLRVQKI LDCVDIAAQE HRRRVTTAVI 360
  361 NEVLEEAVSW HSPPTTRQGK QGKIYYGTQV STQPPAIALF VNDPNRFNDN YRRYIEKQFR 420
  421 KQLGFFGSPI RLFWRGKKVR EMEGSRNRAT KV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	78.522879
Match:	2hjgA
Description:	No description for 2hjgA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits