YRC Public Data Repository - Protein Structure Prediction

Protein:	ELAB_ECOLI
Organism:	Escherichia coli
Length:	101 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ELAB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|45442131, gi\|... - gi\|45442131\|ref\|NP_993670.1\| hypothetical protein YP_2341 [Yersinia pestis biovar Microtus str. 9100... gi\|167424647, gi... - gi\|167424647\|ref\|ZP_02316400.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|22125552, gi\|... - gi\|22125552\|ref\|NP_668975.1\| hypothetical protein y1657 [Yersinia pestis KIM], gi\|21958454\|gb\|AAM852... gi\|166205039, gi... - gi\|166213865\|ref\|ZP_02239900.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167422359, gi... - gi\|167422359\|ref\|ZP_02314112.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|165925466, gi... - gi\|165925466\|ref\|ZP_02221298.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st...	108.0	[0..9]	[101..23]
gi\|77636593 - gi\|77636593\|ref\|ZP_00798666.1\| COG4575: Uncharacterized conserved protein [Yersinia pestis Angola] gi\|117673157 - gi\|117673157\|ref\|ZP_01496215.1\| hypothetical protein YpseI_02001349 [Yersinia pseudotuberculosis IP ...	106.0	[0..9]	[101..12]
gi\|51596882, gi\|... - gi\|51596882\|ref\|YP_071073.1\| hypothetical protein YPTB2563 [Yersinia pseudotuberculosis IP 32953], g... gi\|25322066 - pir\|\|AI0308 probable membrane protein elaB [imported] - Yersinia pestis (strain CO92) gi\|165937620, gi... - gi\|89105729\|ref\|ZP_01178243.1\| COG4575: Uncharacterized conserved protein [Yersinia pestis biovar Or... gi\|16122749, gi\|... - gi\|218929617\|ref\|YP_002347492.1\| hypothetical protein YPO2531 [Yersinia pestis CO92], gi\|16122749\|re... gi\|108808017, gi... - gi\|108808017\|ref\|YP_651933.1\| hypothetical protein YPA_2022 [Yersinia pestis Antiqua], gi\|108779930\|... gi\|108812287, gi... - gi\|229902626\|ref\|ZP_04517743.1\| putative membrane protein [Yersinia pestis Nepal516], gi\|229680073\|g... gi\|149365563, gi... - gi\|149365563\|ref\|ZP_01887598.1\| putative membrane protein [Yersinia pestis CA88-4125], gi\|149291976\|... gi\|145210916, gi... - gi\|145599220\|ref\|YP_001163296.1\| hypothetical protein YPDSF_1940 [Yersinia pestis Pestoides F], gi\|1... gi\|167469670 - gi\|167469670\|ref\|ZP_02334374.1\| hypothetical protein YpesF_17684 [Yersinia pestis FV-1] gi\|167399445, gi... - gi\|167399445\|ref\|ZP_02304969.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|186698988, gi... - gi\|186895962\|ref\|YP_001873074.1\| protein of unknown function DUF883 ElaB [Yersinia pseudotuberculosi... gi\|170023826, gi... - gi\|170023826\|ref\|YP_001720331.1\| protein of unknown function DUF883 ElaB [Yersinia pseudotuberculosi... gi\|152959076, gi... - gi\|77629616\|ref\|ZP_00792202.1\| COG4575: Uncharacterized conserved protein [Yersinia pseudotuberculos... Q669C4\|Q669C4_YERPS - Putative membrane protein - Yersinia pseudotuberculosis gi\|229694433, gi... - gi\|229838067\|ref\|ZP_04458226.1\| putative membrane protein [Yersinia pestis biovar Orientalis str. PE... gi\|229701751, gi... - gi\|229895265\|ref\|ZP_04510439.1\| putative membrane protein [Yersinia pestis Pestoides A], gi\|22970175... gi\|165993028, gi... - gi\|166008646\|ref\|ZP_02229544.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|229898627, gi... - gi\|229898627\|ref\|ZP_04513772.1\| putative membrane protein [Yersinia pestis biovar Orientalis str. In... gi\|162418811, gi... - gi\|162418811\|ref\|YP_001606277.1\| hypothetical protein YpAngola_A1788 [Yersinia pestis Angola], gi\|16...	105.0	[0..9]	[101..10]
gi\|238717743, gi... - gi\|77961203\|ref\|ZP_00825047.1\| COG4575: Uncharacterized conserved protein [Yersinia mollaretii ATCC ...	104.0	[0..1]	[101..1]
gi\|67529815, gi\|... - gi\|67548851\|ref\|ZP_00426731.1\| protein of unknown function DUF883 [Burkholderia vietnamiensis G4], g...	104.0	[0..3]	[101..2]
gi\|170702514, gi... - gi\|170702514\|ref\|ZP_02893393.1\| protein of unknown function DUF883 ElaB [Burkholderia ambifaria IOP4... gi\|74017032, gi\|... - gi\|74017032\|ref\|ZP_00687657.1\| protein of unknown function DUF883 [Burkholderia ambifaria AMMD], gi\|... gi\|172059769, gi... - gi\|172059769\|ref\|YP_001807421.1\| protein of unknown function DUF883 ElaB [Burkholderia ambifaria MC4...	103.0	[0..3]	[101..2]
gi\|78065378, gi\|... - gi\|78065378\|ref\|YP_368147.1\| protein of unknown function DUF883, ElaB [Burkholderia sp. 383], gi\|779... gi\|118713702, gi... - gi\|170732133\|ref\|YP_001764080.1\| protein of unknown function DUF883 ElaB [Burkholderia cenocepacia M... gi\|67094975, gi\|... - gi\|67657561\|ref\|ZP_00454939.1\| protein of unknown function DUF883 [Burkholderia cenocepacia AU 1054]... gi\|84356899 - gi\|84356899\|ref\|ZP_00981731.1\| COG4575: Uncharacterized conserved protein [Burkholderia cenocepacia ... gi\|67103873, gi\|... - gi\|67662556\|ref\|ZP_00459844.1\| protein of unknown function DUF883 [Burkholderia cenocepacia HI2424],...	103.0	[0..3]	[101..2]
gi\|82538556 - gi\|82538556\|ref\|ZP_00897549.1\| hypothetical protein Bpse110_02000251 [Burkholderia pseudomallei 1106... gi\|100236793, gi... - gi\|83680803\|ref\|ZP_00942507.1\| COG4575: Uncharacterized conserved protein [Burkholderia pseudomallei... gi\|82531540 - gi\|82531540\|ref\|ZP_00890758.1\| COG4575: Uncharacterized conserved protein [Burkholderia pseudomallei... gi\|52210773, gi\|... - gi\|53720359\|ref\|YP_109345.1\| hypothetical protein BPSL2749 [Burkholderia pseudomallei K96243], gi\|52... gi\|167904041 - gi\|167904041\|ref\|ZP_02491246.1\| hypothetical protein BpseN_17454 [Burkholderia pseudomallei NCTC 131... gi\|167912298 - gi\|167912298\|ref\|ZP_02499389.1\| hypothetical protein Bpse112_17565 [Burkholderia pseudomallei 112] gi\|167847064 - gi\|167847064\|ref\|ZP_02472572.1\| hypothetical protein BpseB_17455 [Burkholderia pseudomallei B7210] gi\|167895649 - gi\|167895649\|ref\|ZP_02483051.1\| hypothetical protein Bpse7_18044 [Burkholderia pseudomallei 7894] gi\|167920256 - gi\|167920256\|ref\|ZP_02507347.1\| hypothetical protein BpseBC_17047 [Burkholderia pseudomallei BCC215] gi\|67739563 - gi\|67739563\|ref\|ZP_00490123.1\| COG4575: Uncharacterized conserved protein [Burkholderia pseudomallei... gi\|67757501, gi\|... - gi\|67757501\|ref\|ZP_00496377.1\| COG4575: Uncharacterized conserved protein [Burkholderia pseudomallei... gi\|99913800, gi\|... - gi\|99913800\|ref\|ZP_01320397.1\| hypothetical protein Bpse1_03000088 [Burkholderia pseudomallei 1655],... gi\|67686187, gi\|... - gi\|90294941\|ref\|ZP_01214532.1\| hypothetical protein Bpse17_02000428 [Burkholderia pseudomallei 1710a... gi\|167744516 - gi\|167744516\|ref\|ZP_02417290.1\| hypothetical protein Bpse14_40978 [Burkholderia pseudomallei 14] gi\|167817168 - gi\|167817168\|ref\|ZP_02448848.1\| hypothetical protein Bpse9_18662 [Burkholderia pseudomallei 91] gi\|67761398, gi\|... - gi\|67761398\|ref\|ZP_00500108.1\| COG4575: Uncharacterized conserved protein [Burkholderia pseudomallei... gi\|76810265, gi\|... - gi\|76810265\|ref\|YP_334612.1\| transmembrane protein [Burkholderia pseudomallei 1710b], gi\|76579718\|gb... gi\|167720974 - gi\|167720974\|ref\|ZP_02404210.1\| hypothetical protein BpseD_18344 [Burkholderia pseudomallei DM98]	102.0	[0..3]	[101..2]
gi\|100263157, gi... - gi\|87314030\|ref\|ZP_01095089.1\| COG4575: Uncharacterized conserved protein [Burkholderia mallei 20027... gi\|53725606, gi\|... - gi\|53725606\|ref\|YP_103647.1\| hypothetical protein BMA2067 [Burkholderia mallei ATCC 23344], gi\|52429... gi\|194522578, gi... - gi\|83621649\|ref\|ZP_00932057.1\| COG4575: Uncharacterized conserved protein [Burkholderia mallei FMH],... gi\|194527559, gi... - gi\|83626504\|ref\|ZP_00936728.1\| COG4575: Uncharacterized conserved protein [Burkholderia mallei JHU],... gi\|67638144, gi\|... - gi\|67638144\|ref\|ZP_00437081.1\| COG4575: Uncharacterized conserved protein [Burkholderia mallei 10399... gi\|67643913 - gi\|67643913\|ref\|ZP_00442656.1\| COG4575: Uncharacterized conserved protein [Burkholderia mallei GB8 h... gi\|166998260 - gi\|166998260\|ref\|ZP_02264120.1\| hypothetical protein BmalP_00030 [Burkholderia mallei PRL-20] gi\|126448089, gi... - gi\|67648505\|ref\|ZP_00446734.1\| COG4575: Uncharacterized conserved protein [Burkholderia mallei NCTC ... gi\|121599072, gi... - gi\|84523403\|ref\|ZP_01010539.1\| COG4575: Uncharacterized conserved protein [Burkholderia mallei SAVP1... gi\|85066880 - gi\|85066880\|ref\|ZP_01027733.1\| COG4575: Uncharacterized conserved protein [Burkholderia mallei 10229...	101.0	[0..3]	[101..2]
gi\|238714092, gi... - gi\|77957623\|ref\|ZP_00821674.1\| COG4575: Uncharacterized conserved protein [Yersinia bercovieri ATCC ...	101.0	[0..1]	[101..1]

Back

Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNQFGDTRI DDDLTLLSET LEEVLRSSGD PADQKYVELK ARAEKALDDV KKRVSQASDS  60
   61 YYYRAKQAVY RADDYVHEKP WQGIGVGAAV GLVLGLLLAR R

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.19
Match:	1xq8A
Description:	Human micelle-bound alpha-synuclein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits