YRC Public Data Repository - Protein Structure Prediction

Protein:	ECNA_ECOLI
Organism:	Escherichia coli
Length:	41 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ECNA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|24115505, gi\|... - gi\|24115505\|ref\|NP_710015.1\| entericidin A [Shigella flexneri 2a str. 301], gi\|24054830\|gb\|AAN45722....	61.0	[0..1]	[41..1]
gi\|75514908 - gi\|75514908\|ref\|ZP_00737137.1\| COG5510: Predicted small secreted protein [Escherichia coli 53638]	60.0	[0..6]	[41..22]
gi\|224470707, gi... - gi\|224586179\|ref\|YP_002639978.1\| putative entericidin A precursor [Salmonella enterica subsp. enteri... gi\|62130417, gi\|... - gi\|62182784\|ref\|YP_219201.1\| putative entericidin A precursor [Salmonella enterica subsp. enterica s...	48.0	[0..1]	[41..20]
lcl\|NC_016856.1_... - [gene=ecnA] [protein=putative entericidin A precursor] [protein_id=YP_005240649.1] [location=4593026... gi\|197265149, gi... - gi\|197265149\|ref\|ZP_03165223.1\| putative entericidin A [Salmonella enterica subsp. enterica serovar ... gi\|16422897, gi\|... - gi\|16767584\|ref\|NP_463199.1\| putative entericidin A precursor [Salmonella typhimurium LT2], gi\|16422...	47.0	[0..1]	[41..15]
gi\|56130387, gi\|... - gi\|56416130\|ref\|YP_153205.1\| entericidin A precursor [Salmonella enterica subsp. enterica serovar Pa... gi\|197365056, gi... - gi\|197365056\|ref\|YP_002144693.1\| entericidin A precursor [Salmonella enterica subsp. enterica serova...	46.0	[0..1]	[41..1]
gi\|29144636, gi\|... - gi\|29144636\|ref\|NP_807978.1\| entericidin A precursor [Salmonella enterica subsp. enterica serovar Ty... gi\|25511951, gi\|... - gi\|25511951\|pir\|\|AB1046 entericidin A precursor [imported] - Salmonella enterica subsp. enterica ser... gi\|16763157 - gi\|16763157\|ref\|NP_458774.1\| entericidin A precursor [Salmonella enterica subsp. enterica serovar Ty...	46.0	[0..1]	[41..1]

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Predicted Domain #1

Region A:
Residues: [1-41]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKRLIVLVL LASTLLTGCN TARGFGEDIK HLGNSISRAA S

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits